Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5623 ATGGAAATGGCGTCAAGTCCTCGCTCCGTTGAAGAGATCTTCAAAGATTTCAGTGCTCGTAGAGACGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAATTCTACACTCTATGTGATCCAGATAAGGATAACTTGTGCCTGTATGGACATTCAAATGAATCATGGGAAGTGACACTTCCAGCCGAGGAGGTTCCACCTGAGCTGCCAGAGCCGGCTCTCGGAATCAACTTTGCAAGGGATGGCATGAACCGTAGGGATTGGCTTTCTCTTGTTGCGGTGCACAGTGATTCATGGTTGCTTTCTGTGGCATTTTATCTCGGAGCTCGACTTAACCGCAATGAAAGGAAACGTCTATTTAGCTTGATCAATGAGCTTCCAACTGTGTTTGAAGTTGTTACCGACAGGAAGCCAGTAAAGGACAACAAGCCCACTGTAGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGAGATCGAGTGACGGGCAAGTCAAAAACATCCCAAAGTTAGCCGATGATCAAGGTTACGAGGAGGAAGAAGACGAGCACAGTGAAACCCTTTGCGGGAGCTGCGGTGGACACTACAATGCGGATGAATTTTGGATTGGCTGTGATATATGCGAGAGGTGGTACCATGGGAAGTGCGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCAGCATGAAGAGAGGCAGGCCCTAA 726 0.4752 MEMASSPRSVEEIFKDFSARRDGIVRALTQDVDEFYTLCDPDKDNLCLYGHSNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEVVTDRKPVKDNKPTVDSGSKSRGSTKRSSDGQVKNIPKLADDQGYEEEEDEHSETLCGSCGGHYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKRGRP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5623 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Psa7g5623 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Psa7g5623 241 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Psa7g5623 241 SMART PHD_3 187 235 IPR001965 -
Psa7g5623 241 MobiDBLite consensus disorder prediction 140 178 - -
Psa7g5623 241 Pfam PHD-finger 188 236 IPR019787 -
Psa7g5623 241 MobiDBLite consensus disorder prediction 148 163 - -
Psa7g5623 241 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 240 - -
Psa7g5623 241 CDD PHD_AL_plant 187 237 IPR044104 -
Psa7g5623 241 PANTHER CPG BINDING PROTEIN 3 240 IPR045104 GO:0006355|GO:0042393
Psa7g5623 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 235 IPR013083 -
Psa7g5623 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5623 Psa-Chr7 478339853 478343298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5623 4 240 Alfin-like Transcription Factor Family AT5G05610 75.949 1.73e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Psa7g5623 Alfin 1.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5623 - - pvy:116109384 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5623 7 478339853 478343298 Psa7g5623 7 478339853 478343298 ECH