Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5618 ATGGGTGTTGATTACTATAAAGTCCTTCAGGTAGATCGTAATGCCAAAGAGGATGATCTCAAGAAAGCTTATCGCAAACTTGCTATGAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGATGCTGAGGCCAAATTCAAGCAAATCTCAGAAGCTTATGATGTTTTGAGTGATCCACAAAAGAGAGCTGTGTATGATCAGTATGGTGAGGAGGGATTGAAGGGGCAGATGCCTCCTCCTGGTGCAGGTGGATTTTCAGAAGCCAGCGACGGTGGACCGACGACGTTCCGGTTCAATCCGAGAAGTCCTGATGACATATTTTCAGAGTTCTTCGGGTTTGCAAAACCGTTTGGCGGAATGGGTGATATGGGTGGTATGGGTGGTCATCCTGGTACTTCCGGCTTTCCGAGGGGAATGTTTAGGGATGACATTTTCTCTTCTTTAAGGCATGCAACAACTGGTGAAGGATCTGGCAATGTGCCGAGAAAAAGTGCACCGATAGAGAGAACATTGCCTTGCGGTTTGGAGGATTTGTATAAAGGAACCACGAAAAAAATGAAGATTTCTAGGGATGTTTCTGATTCTAGTGGGAGGCCTACTACGGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAACAAAAAGGACTTATTCCCGCAGACCTTGTTTTTATCATCGACGAGAAGCCTCATAGTGTCTTCAAGAGGGATGGCAACGATCTTGTTGTCACTCAGAAGATCACTCTTGTAGAAGCTCTGACAGGTTACACAGCGCAAATATCAACCCTCGACGGAAGGAATCTTACGGTCCCCGTCAACACCATTATCAGTCCATCGTACGAAGAAGTTGTTAAAGGAGAGGGTATGCCGATTCCTAAAGAACCTTCCAAAAAGGGAAACTTGAGAATCAAGTTCAACGTAAAGTTTCCGTCTAGACTTACATCAGAACAGAAGACCGGAATCAAGCGATTATTGACATAA 1029 0.4383 MGVDYYKVLQVDRNAKEDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPGAGGFSEASDGGPTTFRFNPRSPDDIFSEFFGFAKPFGGMGDMGGMGGHPGTSGFPRGMFRDDIFSSLRHATTGEGSGNVPRKSAPIERTLPCGLEDLYKGTTKKMKISRDVSDSSGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQKGLIPADLVFIIDEKPHSVFKRDGNDLVVTQKITLVEALTGYTAQISTLDGRNLTVPVNTIISPSYEEVVKGEGMPIPKEPSKKGNLRIKFNVKFPSRLTSEQKTGIKRLLT* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5618 342 CDD DnaJ_C 166 329 - -
Psa7g5618 342 Pfam DnaJ domain 4 67 IPR001623 -
Psa7g5618 342 Gene3D - 167 245 - -
Psa7g5618 342 CDD DnaJ 4 59 IPR001623 -
Psa7g5618 342 PANTHER BNAANNG28460D PROTEIN 1 341 - -
Psa7g5618 342 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 341 - -
Psa7g5618 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 249 335 IPR008971 GO:0006457|GO:0051082
Psa7g5618 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 168 247 IPR008971 GO:0006457|GO:0051082
Psa7g5618 342 PRINTS DnaJ domain signature 6 24 IPR001623 -
Psa7g5618 342 PRINTS DnaJ domain signature 24 39 IPR001623 -
Psa7g5618 342 PRINTS DnaJ domain signature 42 62 IPR001623 -
Psa7g5618 342 PRINTS DnaJ domain signature 62 81 IPR001623 -
Psa7g5618 342 SMART dnaj_3 3 62 IPR001623 -
Psa7g5618 342 Pfam DnaJ C terminal domain 168 326 IPR002939 -
Psa7g5618 342 Gene3D - 247 327 - -
Psa7g5618 342 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Psa7g5618 342 SUPERFAMILY Chaperone J-domain 3 95 IPR036869 -
Psa7g5618 342 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Psa7g5618 342 Gene3D DnaJ domain 3 122 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5618 Psa-Chr7 478204129 478206985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5618 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 2.38e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5618 7 478204129 478206985 Psa7g5618 7 478204129 478206985 ECH