Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5558 ATGTTTATCGACGAGTTCATACCAACATTGGAAGGAGACCAAGGCATCTGCTATACACATCCTAAAAATCTTCCAGGTGCTAAGAAAGATGGGATTAGCATTCACTTTTTTTTCACAGAAACAATGAATGCATATGGTACTGGTCAACGGAAACGTCAAAAAATTCAACATCATGGTTCAACTGAAGGTCATGTACGCTGGCACAAGACTGGTAAGACCAAAGCTGTAATAGAAGATGGAGTACATAAGTGGGTATCTGGTGCTGGGCAGTCTCAGTGCTCTACTTGTAGACAGGAGTTTGGATTCACTAGAAAGCGGCACAACTGTTATAATTGCGGACTTGTGCACTGCCATTCATGCAGCTCAAGGAAAGCGTTAAGAGCAACCCTTGCTCCTAATTCTGGGAAGCTGTATCGTGTTTGTGATTCTTGTTATGTAAAATTGAACAAGGTTGCAGAATCCAACAATAATACTCGGAGGAATGCAATGCCTCGTATTCCAGGCGAAAACAAGGATAGGTTAGAAAAGTCTGAGCTGAGATTGACAAAGTCAGTCGTGTCTTCTAATATGGATTTGATAAAGCAATTAGATAATGTAAAACGCATAGTCCCGAGACCTGGTTTTACACCGTCCGGAGTGAATTCCAGGTCTATTTCACCTTTCTCTAGAAGATTGAACCCTCCTCGATCAGCTACGCCCATTCCAACAACATCCGGGCTCGCCTTCTCAAAAAGCATTACTGATAGTTTGAAGAAAACAAATGAACTTTTGAATCAAGAAGTGCGGAAGTTGCGCTCTCAGGTTGAGACCCTGAGACAGAGATGTACATCTGATAATCATGCATCTTCACCTAAAAATATTCGCCGTAGCTTTGTAATGTCTGCAGATACATTTGATGATACAGAAGTCAATAACATCGGTTTAAAGATTAGTGATTCACTGGGAGATTTGACTAAACCTCCAACCACTAGAAGTTCTCATGCTTATGATGGCAGTGTCTCTTCTAATGATGGGACGGACGAGTGA 1026 0.4162 MFIDEFIPTLEGDQGICYTHPKNLPGAKKDGISIHFFFTETMNAYGTGQRKRQKIQHHGSTEGHVRWHKTGKTKAVIEDGVHKWVSGAGQSQCSTCRQEFGFTRKRHNCYNCGLVHCHSCSSRKALRATLAPNSGKLYRVCDSCYVKLNKVAESNNNTRRNAMPRIPGENKDRLEKSELRLTKSVVSSNMDLIKQLDNVKRIVPRPGFTPSGVNSRSISPFSRRLNPPRSATPIPTTSGLAFSKSITDSLKKTNELLNQEVRKLRSQVETLRQRCTSDNHASSPKNIRRSFVMSADTFDDTEVNNIGLKISDSLGDLTKPPTTRSSHAYDGSVSSNDGTDE* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5558 341 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 80 198 - -
Psa7g5558 341 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 199 279 - -
Psa7g5558 341 MobiDBLite consensus disorder prediction 316 341 - -
Psa7g5558 341 SUPERFAMILY FYVE/PHD zinc finger 83 160 IPR011011 -
Psa7g5558 341 SUPERFAMILY NAC domain 12 84 IPR036093 GO:0003677|GO:0006355
Psa7g5558 341 Pfam FYVE zinc finger 83 149 IPR000306 GO:0046872
Psa7g5558 341 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 87 149 IPR017455 -
Psa7g5558 341 CDD FYVE_like_SF 92 145 - -
Psa7g5558 341 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 80 198 - -
Psa7g5558 341 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 199 279 - -
Psa7g5558 341 Coils Coil 247 274 - -
Psa7g5558 341 MobiDBLite consensus disorder prediction 314 341 - -
Psa7g5558 341 Pfam No apical meristem (NAM) protein 4 105 IPR003441 GO:0003677|GO:0006355
Psa7g5558 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 163 IPR013083 -
Psa7g5558 341 SMART fyve_4 81 150 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5558 Psa-Chr7 475577870 475579432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5558 2 77 NAC Transcription Factor Family AT1G28470 59.740 3.12e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5558 - - gmx:100783270 323.168