Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5548 ATGGCTAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAACCAACTACCTCATGACCCTTTACTTCCTTTCTACGATTCATCTTTCATTACTAGCTTCTCTAACCAACATGTTTTGAAACCAACTTCATGTTCTTCTTCTAATAATAATTCTATGAAAGATTTAGAATGTTCTAACTTCATGATGCGGTTTTCAAGAGAAGAAGGTAAAAGGGTTATTATGAATAGTAATAATAATAATAATAATAATAATAATATTTCTTCTTCTCCTTCTTCTTCTAATCATCCTTATTATGAAAGTTTGAATCATAGTAATAATAACCCTTTTCTTTACCAAGCTCAAAACATTCAGAACAGTAGTACTATGATGTTGAACCATGAGCCTTTGTCTTTGTCACTTTCATCTAATAAAAGTGTTGGTGATAATAATTTGCCTTTGGAGTTGAATCTTCAAAGATATGGATCTGTGATTTATGGTGGTGGAGGTGTGATTCAAGGGCTGGTTGAAGGTGGTGGTGGTGGTGGTGGTTCAGTTCCATTTACTGGCTATGCTTCTGTTTTGAAGGATTCTAGGTTTTTGAAACCGGCTCAAGAATTGTTGGAAGAGATGTGTGATGTTGGAGGAAGAAATGTTTGTGGTGAAAAGGTTGTGGTTATGGCTGATTCATCTATGATGATGGAATCTCCTTTGGAAAGATTGAGTGAAGAAGAAGATCCATTTGGCGATGGTAGAAATAAATCAAGACTCTTAACTATGCTTGATGAGGTATACAAGAGGTATAGACAATACTACCAGCAAATGCAATCGGTAGTTACGTCGTTCGAGTACGTTTCGGGTCTCAACAATGCAGCTCCGTATGCAAGTTTGGCGATAAAAGCAATGTCGAAACATTTTAGATGCTTGAAGAAGGCAATAACTGACCAACTTCAGTCCAATAATAAGGCTCATTTTCACTCGAGTAACAGAAGGGATGAATCTCCGAGATTTGGAAATAACGAACGAGGAGGTCCGTATGGCCACAGGTCAGGTTATCTTGAGCAGCAACAACAACCTGTTTGGCGACCTCAAAGAGGTCTCCCCGAACGCGCTGTCACTGTTCTTAGAGCTTGGCTGTTTGAACACTTTCTGCATCCCTATCCGACTGATACGGACAAGATAATGTTAGCTAAACAAACCGGTCTATCGCGTAGCCAGGTATCAAATTGGTTCATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACACATGCTAGAAACAAGACAAACAGCTCCAAAAGATTCACAACAAAAGGAAGAAAACTCTAGAAACAAATCAAATGATCAACAACACCATTTGCCTTCAGATACTTCTCTACATTCGGAGAATCCGTCTACCTCAACTAGCAAGTTTCACGACGCATCATCTTACAAGCGCGTCGTAAACGAGATTCCAAACATGCCAACTAGGACTCAAGGACAACAACATCAACAACCACAACAACAACAAATGAATCTACCGTTTCAACAAGTAGGTGTTGGAGTGAACATGGGAAGTGGAAGCAGCAGCAACAACAATAATAATAGTAATAGTAATGTGTCATTGACACTAGGACTTTATCAAAATCATGGAATTGGTTTAGCTGAACCATTTCCATTAAGTGCTGCTCAACGTTTTGGTCTTGGTCTTGAAACCAATAATGAAGGTAATTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAGGGCAAATGTTTCATGATTTTGTAGGATGA 1812 0.3847 MASDEGFEGYHVPQQSRRDKLRVVVAQNQLPHDPLLPFYDSSFITSFSNQHVLKPTSCSSSNNNSMKDLECSNFMMRFSREEGKRVIMNSNNNNNNNNNISSSPSSSNHPYYESLNHSNNNPFLYQAQNIQNSSTMMLNHEPLSLSLSSNKSVGDNNLPLELNLQRYGSVIYGGGGVIQGLVEGGGGGGGSVPFTGYASVLKDSRFLKPAQELLEEMCDVGGRNVCGEKVVVMADSSMMMESPLERLSEEEDPFGDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQSNNKAHFHSSNRRDESPRFGNNERGGPYGHRSGYLEQQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQTAPKDSQQKEENSRNKSNDQQHHLPSDTSLHSENPSTSTSKFHDASSYKRVVNEIPNMPTRTQGQQHQQPQQQQMNLPFQQVGVGVNMGSGSSSNNNNNSNSNVSLTLGLYQNHGIGLAEPFPLSAAQRFGLGLETNNEGNYVMSGFESQNRHFGGQMFHDFVG* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5548 603 Pfam Associated with HOX 200 320 IPR006563 -
Psa7g5548 603 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Psa7g5548 603 SMART HOX_1 367 431 IPR001356 GO:0003677
Psa7g5548 603 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 25 580 - -
Psa7g5548 603 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Psa7g5548 603 MobiDBLite consensus disorder prediction 91 110 - -
Psa7g5548 603 SMART prehox3 195 321 IPR006563 -
Psa7g5548 603 CDD homeodomain 367 428 IPR001356 GO:0003677
Psa7g5548 603 MobiDBLite consensus disorder prediction 461 485 - -
Psa7g5548 603 MobiDBLite consensus disorder prediction 436 460 - -
Psa7g5548 603 SUPERFAMILY Homeodomain-like 369 434 IPR009057 -
Psa7g5548 603 MobiDBLite consensus disorder prediction 325 344 - -
Psa7g5548 603 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 580 - -
Psa7g5548 603 MobiDBLite consensus disorder prediction 436 487 - -
Psa7g5548 603 Gene3D - 370 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5548 Psa-Chr7 475042461 475047316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5548 130 603 Homeobox Transcription Factor Family AT5G02030 45.070 6.43e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa7g5548 POX 3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5548 - - cam:101498314 775.393