Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5545 ATGGAACCGGAACAACCTACCGTTACGGCGGTCCACGACGGAAGCGGCGACGACGGTGTAGTTGCATTAGGGGAAGGTGCTGTGAGCAACGAGAACAACAGCAGGGACAGAGTGAAAGGACCTTGGTCTCCTGAAGAAGACGCCATTCTCAGCGGTCTTGTGAGTAAGTTTGGTGCTAGAAACTGGAGTCTCATCGCTCGGGGGATCTCTGGGAGATCCGGTAAGTCGTGTCGACTTCGGTGGTGTAATCAGCTTGACCCTGCTGTTAAGCGGAAGCCGTTTACTGATGAAGAGGACCGGATCATAGTTGCTGCTCATGCGGTCCATGGAAACAAATGGGCAGCTATTGCCAGGATTCTACCAGGTAGAACAGACAACGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGCCGGGGAGTTGAAAATGGTAAGATTAAGTTAGAATCAGGTAACATGGTGGAAGATATTAGCTTGGAGAAAGCCAGAGCATCATCAGAAGAAACTCTATCATGTGGAGATCTTAATTCATTGAAATCATCTGAAGGAAGAGATTTTAGTTCTAAGGAGACTGTGGACGATAGATATGAAGAGAAAGCAAGGACTGATCCGCAATCATACCATGAAGTCAGGGATCTGCCGATTGTTGAAGTCAGGGATCCACCGACCCTTTTTAAGCCTGTAGCACGTGTAAGTGCTTTTAACGTATATCACACTTGTAATGGTTCACAGCCTTCATCATCAGTTCCAAGACCTGTTCCTCCAATGCAAGGACCTGTTTTACATTCGCCACAGTCAGATATGGAAATTTGCAAAATGCTCAATGGAACTTATGGCGACCGGTCAGTACCTCAACAGTGTGGTCATGGATGCTGTTCTTCTCTAAATGGTAACAACTCAAAAAGCTCGTTGTTGGGCCCAGACTTCGTTGAATATTCAGAACCTCAATCTTTCCCGAGTTTTGAGCTGGCTGCAATAGCTACGGACATTAGTAATCTTGCTTGGCTTAAAAGTGGATTGGAGAATAATAGTGTCAAAATGATGGGTGATACTGCTGGCAGGGTTAATATCTAA 1074 0.46 MEPEQPTVTAVHDGSGDDGVVALGEGAVSNENNSRDRVKGPWSPEEDAILSGLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAVHGNKWAAIARILPGRTDNAIKNHWNSTLRRRGVENGKIKLESGNMVEDISLEKARASSEETLSCGDLNSLKSSEGRDFSSKETVDDRYEEKARTDPQSYHEVRDLPIVEVRDPPTLFKPVARVSAFNVYHTCNGSQPSSSVPRPVPPMQGPVLHSPQSDMEICKMLNGTYGDRSVPQQCGHGCCSSLNGNNSKSSLLGPDFVEYSEPQSFPSFELAAIATDISNLAWLKSGLENNSVKMMGDTAGRVNI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5545 357 CDD SANT 93 136 IPR001005 -
Psa7g5545 357 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Psa7g5545 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 85 IPR017930 -
Psa7g5545 357 PANTHER MYB PROTEIN-RELATED 13 340 - -
Psa7g5545 357 MobiDBLite consensus disorder prediction 181 206 - -
Psa7g5545 357 CDD SANT 41 83 IPR001005 -
Psa7g5545 357 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Psa7g5545 357 SMART sant 38 87 IPR001005 -
Psa7g5545 357 SMART sant 90 138 IPR001005 -
Psa7g5545 357 MobiDBLite consensus disorder prediction 183 206 - -
Psa7g5545 357 Gene3D - 38 90 - -
Psa7g5545 357 Gene3D - 93 139 - -
Psa7g5545 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Psa7g5545 357 Pfam Myb-like DNA-binding domain 42 99 - -
Psa7g5545 357 PANTHER - 13 340 - -
Psa7g5545 357 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5545 Psa-Chr7 474683067 474688039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5545 35 355 MYB Transcription Factor Family AT3G09230 50.904 1.04e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa7g5545 Myb_DNA-bind_6 7.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5545 7 474683067 474688039 Psa7g5545 7 474683067 474688039 ECH