Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5503 ATGGGTAGCAAGGTCTCCGACGACCACCTCTACACCGTCCGATCAATAGTCGGTTCGGAATTCACCGACATGGACATCATAAGAGCCCTGCACTTGGCAAAAAACGACGTCACCGCCGCTATCAACATTATCTTCGACACTAGTACCCCTAAATCCCAACCCACTCACGCCATCAACAAACGACGGGTTTCTCCTCCGAAATCAACTCCACCCACGGTTACCTCTAGCTCCAAGCGCAATGCCGATGTCGAAAACAAGAAATGCTCCGTCGAGTCTAAATCTATTGATTGGTGGTTCGTTGGCTCCGGTGAAGTGGCAGGGCTGTCCACGTGTAAAGGGAGGACTATAAAATCAGGTGATGCAGTGATTTTCAAGTTTCCAGCCAAAAAGGTTTCTGTTTCGCCTTCTCCGGGTAAGGTGTTTGGGCGAGCAGCAGCTTGTTCTGAGATAGTTCGGTTTTCTAATGAACAAGATTGGGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTTTGTTGCCTCTGGTGCGGGATAATAAGGTTAAGATTGAAGGGAAATGTGAATTTGCACCTAATGTTTTGGGCATCATGGATACTATCATTTTGTCAATCAGTGTATTCATCAATAGGTCAATGTTTGTTAAGCAACATCAGGTTTCTCTTAAGGATGCTGCAAATTCGACAGATGAATCGGTGTTTCATCCTCTTCCTTCCCTTTTCCGGTTGCTTGGTCTTAGTCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGATTTCTGTTCCAACAAGCGTCCTTTCAGTCAAACGGTCACATCATTACATGCCAAGTCTGAACGTCCTTTGCAAAATGGTCATGAGAATGAAACCGAGGATACTGTTCCCGAATTTGATCTTGAAAACATTGTTGGTGTTGCTTCAAGTTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTTTGTGATCTGCGCCCCTATCAAAAGCAAGCTCTTCATTGGATGATTCAGATGGAGAAGGGACGGCCAAGGGACGATACTACAACAACCCTTCATCCTTGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAACAGAATTTCCCAGCACCCTTCAAATGGCTAGAGGAGGAATTTTGGCAGATGCCATGGGACTTGGAAAGACAGTAATGACCATATCCCTTCTCATTACCCATTCAGGAAGGGGTGGATTATTTGGCAGTCAACCCATAACCCAGTCATTTATTGAAGGTGGTGAAGTTAGTGATACTGGTACAATTCCCAATTTTGCAAACATTCCAAAGAAGGTAACCAAATTTACTGGTTTTGATAAACCAACAAAGCAAAGCAATTCTCTAACAAGTGGCGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCACGTGCGCCCCGGGTCCCTGTCTCTATATGTTCATTATGGGCAAAGTAGACCCAAAGATGCAAAAAGTCTAGCTCAATGTGACATTGTAATTACTACATATGGAGTTTTGGCTTCTGATTTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTTTCAATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCGCATACTATAAAATCTTCTAAAAGTCAAGTTTCTATGGCTGCTTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAAGATGTTTACAGTCTTCTTCGCTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGCGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATACTAGTTCTCCCTCCTGCTGATATGCAGATAATTTATTGTGAACCCACAGAAGCTGAAAAAGACTTCTATGAGGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTTGTTGAGCAAGGACGAGTTCTTCATAACTATGCTTCAATTCTAGAGCTACTTTTACGTCTTCGGCAATGCTGTGACCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAAGAAACTAGCTAAGCGCTTCCTTAAAGGAACCTGTAATGCTTCAGAAGGTGAAGAAAAAGATGCACTCTCACGAGCTTATGTTCATGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCATGTGCTCACCGCCTTTGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTACCTCTGGTTTATGTCCTGTTTGTAGGAAAATAGTCAGCAAGCAGGATCTTATTACCGCCCCTACTGAGAGTCGATTTCAGGTTGATATCGAGAAGAACTGGGTAGAGTCATGCAAGGTAACCGGTCTTTTGAATGAACTTGAAAATATCCGCTCCTCCGGATCTAAGAGCATTGTTTTCAGCCAGTGGACTGCATTTCTAGATCTCTTGCAGATTCCCTTTACTCGGAATAAAATATCATTTCTTCGTCTTGATGGGACATTGAATATGCAGCAGCGGGAAAAAGTAATTAAACAATTCTCAGAAGACAGTGACATACAGGTGTTGTTGATGTCGCTAAAAGCTGGTGGAGTGGGTATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGATCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGATTTATTGTGAAGGGGTCAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAAAGAATGATTTCTGGTGCCTTGACGGATCAGGAAGTTCGATCTGCACGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3021 0.4383 MGSKVSDDHLYTVRSIVGSEFTDMDIIRALHLAKNDVTAAINIIFDTSTPKSQPTHAINKRRVSPPKSTPPTVTSSSKRNADVENKKCSVESKSIDWWFVGSGEVAGLSTCKGRTIKSGDAVIFKFPAKKVSVSPSPGKVFGRAAACSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVKIEGKCEFAPNVLGIMDTIILSISVFINRSMFVKQHQVSLKDAANSTDESVFHPLPSLFRLLGLSPFKKAELTPGDFCSNKRPFSQTVTSLHAKSERPLQNGHENETEDTVPEFDLENIVGVASSSELEEMDPPENLLCDLRPYQKQALHWMIQMEKGRPRDDTTTTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLQMARGGILADAMGLGKTVMTISLLITHSGRGGLFGSQPITQSFIEGGEVSDTGTIPNFANIPKKVTKFTGFDKPTKQSNSLTSGGNLIICPMTLLGQWKAEIETHVRPGSLSLYVHYGQSRPKDAKSLAQCDIVITTYGVLASDFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLKKLAKRFLKGTCNASEGEEKDALSRAYVHEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKIVSKQDLITAPTESRFQVDIEKNWVESCKVTGLLNELENIRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFLRLDGTLNMQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGSVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5503 1006 Pfam Zinc finger, C3HC4 type (RING finger) 771 810 IPR018957 GO:0046872
Psa7g5503 1006 MobiDBLite consensus disorder prediction 52 83 - -
Psa7g5503 1006 SMART ring_2 771 810 IPR001841 -
Psa7g5503 1006 Pfam SNF2-related domain 325 715 IPR000330 GO:0005524|GO:0140658
Psa7g5503 1006 ProSiteProfiles Zinc finger RING-type profile. 771 811 IPR001841 -
Psa7g5503 1006 SMART HIRAN_2 100 208 IPR014905 GO:0003676|GO:0008270|GO:0016818
Psa7g5503 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 766 823 IPR013083 -
Psa7g5503 1006 CDD RING-HC 771 810 - -
Psa7g5503 1006 SMART ultradead3 318 621 IPR014001 -
Psa7g5503 1006 Gene3D - 653 1006 IPR027417 -
Psa7g5503 1006 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 380 599 IPR014001 -
Psa7g5503 1006 MobiDBLite consensus disorder prediction 65 79 - -
Psa7g5503 1006 Gene3D - 379 649 IPR038718 -
Psa7g5503 1006 SMART helicmild6 870 953 IPR001650 -
Psa7g5503 1006 ProSitePatterns Zinc finger RING-type signature. 786 795 IPR017907 -
Psa7g5503 1006 PANTHER DNA REPAIR PROTEIN RAD5 91 1006 - -
Psa7g5503 1006 CDD SF2_C_SNF 837 964 - -
Psa7g5503 1006 SUPERFAMILY RING/U-box 759 817 - -
Psa7g5503 1006 CDD DEXDc_SHPRH-like 322 637 - -
Psa7g5503 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 1000 IPR027417 -
Psa7g5503 1006 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 91 1006 - -
Psa7g5503 1006 Pfam Helicase conserved C-terminal domain 845 953 IPR001650 -
Psa7g5503 1006 Pfam HIRAN domain 101 204 IPR014905 GO:0003676|GO:0008270|GO:0016818
Psa7g5503 1006 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 844 1006 IPR001650 -
Psa7g5503 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 637 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5503 Psa-Chr7 472619174 472627704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5503 1 1006 RAD5 or RAD16-like Gene Family AT5G22750 69.342 0.0 1439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa7g5503 SNF2_N 3.9e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5503 K15505 - gmx:100794558 1685.62