Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5500 ATGCAAATCAAATCAATCTCTCTCTCTCAGTTCACATTCCATAGTTTCAAAACTTATTGTTCTTGTGGCACAAAAATGGAAGAGGATGATAAGAAGGAGGAAGCAGCAAAGATGATCGGTACTTCTGCTACCGATCATCAAGAAGAAGATGGTGACGATAGACTGCCGCAATTGCCATTGGATTCTTCATTCTTGAATCAACTTCACATCAAAGAAGAACCTTCTGAAATTGAAACTGAAACTTCTTCCAAGAAAAGAAAATTGTTAGGTGGTGATGCAGCAATGAATAATTCTTCAATATTTCCAGTGCCATTGCCATTGGATTCTTCTCCCAACCTAACACCAGTGAAGAGAAAAGAGGGACCTTCTTTAACAACTTCTTCAGAAACTCCAACCAAGAGGAGAAGAGGACGCCCTCCTGGTTCAAAGAATAGAAAAGAAGGACCTTCTCTAACAACTTCAGAAGCAACTTCTGCAGAAACTCCAACGAAGAGAAGACCCGGCCGCCCTATTGGTACCCGTGGTGGAAAACTCACCCCTCATGTGATTGAGTTGAATGCTCGCCAGGATGTGGTAGAGGTTCTATACAACATATCTGTGGCAAATCGTCGTAAAACTGTTATCATACTTTCTGCATCCGGTTCTGTATCAGACATTGTGAATCTTACTCCAGACGGTCCCATCCACATCAAGGGAGAATTTGAGATACATTTAATGTCGATAAAAAGTCTCGTTGATGGTGCTGGTCGTCACTGTCGTGAAAAGGCAACATGTATGGTTACATGCATAGATGATAAGGGAAATCCGTTTGGAAATGCTTCTGTCAATTCTCTCATAGTGGCCAGGCGTGTTAAAATTACTGCGGCCTTATTCAACACAAACACTGCTAAGAAAACAGGTGCAAGAATTGCAGAGATTGCTCGAAATGATGAAAAGATTCCCATAGCAGCCGTCCCTCTTCAAATGATTGGGGCCAACATTGATCCCAACAACTCCATCAAAGAAGAAGCTTGTACGTCTGGTTTTTTGCCAACAACTCCATCAGTGGCATCAGCAACAACTAGTACTTCAAATGATCAGGACATGAAATCTCCTTCTGGGCACGGATGTAAGTGCTGA 1119 0.4218 MQIKSISLSQFTFHSFKTYCSCGTKMEEDDKKEEAAKMIGTSATDHQEEDGDDRLPQLPLDSSFLNQLHIKEEPSEIETETSSKKRKLLGGDAAMNNSSIFPVPLPLDSSPNLTPVKRKEGPSLTTSSETPTKRRRGRPPGSKNRKEGPSLTTSEATSAETPTKRRPGRPIGTRGGKLTPHVIELNARQDVVEVLYNISVANRRKTVIILSASGSVSDIVNLTPDGPIHIKGEFEIHLMSIKSLVDGAGRHCREKATCMVTCIDDKGNPFGNASVNSLIVARRVKITAALFNTNTAKKTGARIAEIARNDEKIPIAAVPLQMIGANIDPNNSIKEEACTSGFLPTTPSVASATTSTSNDQDMKSPSGHGCKC* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5500 372 Pfam Plants and Prokaryotes Conserved (PCC) domain 180 292 IPR005175 -
Psa7g5500 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 115 362 IPR039605 GO:0003680
Psa7g5500 372 SUPERFAMILY AF0104/ALDC/Ptd012-like 177 298 - -
Psa7g5500 372 MobiDBLite consensus disorder prediction 146 161 - -
Psa7g5500 372 MobiDBLite consensus disorder prediction 25 61 - -
Psa7g5500 372 MobiDBLite consensus disorder prediction 349 364 - -
Psa7g5500 372 ProSiteProfiles PPC domain profile profile. 175 321 IPR005175 -
Psa7g5500 372 MobiDBLite consensus disorder prediction 25 56 - -
Psa7g5500 372 Gene3D - 180 312 - -
Psa7g5500 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 115 362 - -
Psa7g5500 372 MobiDBLite consensus disorder prediction 113 177 - -
Psa7g5500 372 MobiDBLite consensus disorder prediction 349 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5500 Psa-Chr7 472599000 472601121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5500 124 341 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 25.410 3.93e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5500 - - mtr:MTR_2g084675 143.28