Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5494 ATGATGTTGAATCGTGGGTCAAATGTTTCGGCTGAAGTGAGTGGTTGTTCAGATGAAGAACTATGGAAGGCAATTGCAGGACAATTGGTGGATGTTCCTTCTGTTGGTCAAAGGGTTTTCTATTTTCCTCAAGGACACATGGAACAATTAGAGGCTTCGACGAATCAGGAACTGAATCAGAGGAGTCCTTTGTTGAAACTTCCTACGAAGATCCTTTGTCGCATCGTGAATATCCATTTACTGGCTGAACAAGAAACAGATGAAGTTTACGCGCAGATAACTTTGGTGCCGGAATCTAATCAAGACGAGCCTACAGTCCCTGATTCGTGCGCCGATGAACCTCCGAGGCCGAAAATTCACTCGTTTTGCAAGATCTTAACCGCTTCGGATACTAGCACACATGGTGGCTTCTCTGTTCTCAGAAAACATGCAACGGAATGCCTTCCTCCTTTGGACATGTCTCAACCAACACCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAGTGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTTCTCACAACCGGATGGAGTACATTTGTGACTTCCAAAAGATTAGTCGCCGGAGATACCTTTGTGTTTTTGAGAGGGGAAAACGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAGTATGCCATCGTCCGTCATTTCTAGCCAAAGCATGCATCTAGGAGTTCTTGCAACTGCCTCCCATGCCGTTGCAACTCAGACTCTTTTCGTCGTATATTATAAGCCGAGGACGAGCCAGTTCATTGTAAGTGTGAACAAGTACTTGTCAGGTATCAATAATAAGTTTGCTGTCGGCATGCGGTTCAAGATGAGGTTTGAGAGTGATGATTCTGCCGAGTCTGACAAAAGATTCTCCGGTACCATAGTTGGAGTCGAAGATATCTCTCCCCATTGGGCAAACTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAGCCTGCGGCTATTCCAAGACCCGACAGGGTTTCGCCATGGGACATAGAACCCTTTGTTTCATCAGCTTTGACACCAACAGTTCAACCTACGGCTGCAAAGACAAAGCGGCCTCGACCAACCAATGAAACTCCTGATGTTGACACGACATCGGCCGCCTCTATTTTCTGGGATGCTAGGCTGGCACAGACCGATATGACACAACGTAGCGTTTTAGCCGAAAGCAAAAAAGGCGATAACAATATTAGTACGTGGCATCATAAGCAAACCGATACGATGAATACTAAAAGCAGCAACAACAACAACAACAACAATGCTTTATTGAGGAATCATACAGAAGGAAGTTGGCTATCGTCTCCCCGTTCCAGCCATCCTTCTCATTCGCTTCACGACACAACCGATGATAGCAAGACTCTCTCAGCTTGGCCTGTTTCACAGTCTCAATCATCTATACTGAACGTTGATCGCGTCCCTGATCAAGTTGATAAAGACAACAAAGTCGAGACAGCTACGGGTTGTCGATTGTTTGGAGTCGAACTTATTGATCATTCGAAAAACTCGGGCGCTGTAGGGAAAACATCTTCACATGCAGTAAATGTAACCGGAGCAACCACGGAAGTTAGTTCCAGCACCATGTCTAGCATTGATACCGGCCGTAAGTCTGACATCTCAAAGGCTTATACGGAGAGGAAACAAGAACCGCAACAAGTATCACCGAAGGAAACTCAGAACAAGCAAATTTGTAGTAGAAGTCGAACCAAGGTTCAAATGCAGGGCGTTGCAGTTGGCCGAGCGGTGGATTTGGCAATGTTGAACGGGTACGATCAACTTATCGATGAATTAGAAGAGTTGTTCGACATCAAGGGACAGCTTCAACACAGAAACAAGTGGGAAATTGTCTTCACCGACAATGAAGGAGATATGATGCTTGTCGGAGACGATCCATGGCCTGAGTTCTGTAACATGGTAAAAAGAATCTTCATTTGTTCAAGCCAAGATGTGAAGAAGATGAAATCAGGAAGCAAATTACCAATCTCTTCTTCGATCGAAGAAGGGACCGTGATAAGTTCAGACACAACCGAACCATGA 2088 0.455 MMLNRGSNVSAEVSGCSDEELWKAIAGQLVDVPSVGQRVFYFPQGHMEQLEASTNQELNQRSPLLKLPTKILCRIVNIHLLAEQETDEVYAQITLVPESNQDEPTVPDSCADEPPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLSGINNKFAVGMRFKMRFESDDSAESDKRFSGTIVGVEDISPHWANSKWRSLKVQWDEPAAIPRPDRVSPWDIEPFVSSALTPTVQPTAAKTKRPRPTNETPDVDTTSAASIFWDARLAQTDMTQRSVLAESKKGDNNISTWHHKQTDTMNTKSSNNNNNNNALLRNHTEGSWLSSPRSSHPSHSLHDTTDDSKTLSAWPVSQSQSSILNVDRVPDQVDKDNKVETATGCRLFGVELIDHSKNSGAVGKTSSHAVNVTGATTEVSSSTMSSIDTGRKSDISKAYTERKQEPQQVSPKETQNKQICSRSRTKVQMQGVAVGRAVDLAMLNGYDQLIDELEELFDIKGQLQHRNKWEIVFTDNEGDMMLVGDDPWPEFCNMVKRIFICSSQDVKKMKSGSKLPISSSIEEGTVISSDTTEP* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5494 695 Gene3D - 283 357 - -
Psa7g5494 695 SUPERFAMILY CAD & PB1 domains 584 659 - -
Psa7g5494 695 Pfam AUX/IAA family 548 667 IPR033389 -
Psa7g5494 695 PANTHER AUXIN RESPONSE FACTOR 9 19 682 - -
Psa7g5494 695 MobiDBLite consensus disorder prediction 468 488 - -
Psa7g5494 695 MobiDBLite consensus disorder prediction 563 583 - -
Psa7g5494 695 MobiDBLite consensus disorder prediction 358 383 - -
Psa7g5494 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa7g5494 695 MobiDBLite consensus disorder prediction 446 490 - -
Psa7g5494 695 Gene3D - 119 223 IPR015300 -
Psa7g5494 695 MobiDBLite consensus disorder prediction 406 433 - -
Psa7g5494 695 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa7g5494 695 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Psa7g5494 695 SUPERFAMILY DNA-binding pseudobarrel domain 111 251 IPR015300 -
Psa7g5494 695 SMART B3_2 122 224 IPR003340 GO:0003677
Psa7g5494 695 Coils Coil 607 627 - -
Psa7g5494 695 Gene3D - 579 671 - -
Psa7g5494 695 MobiDBLite consensus disorder prediction 559 583 - -
Psa7g5494 695 ProSiteProfiles PB1 domain profile. 583 664 IPR000270 GO:0005515
Psa7g5494 695 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Psa7g5494 695 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5494 Psa-Chr7 472437393 472443266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5494 2 676 B3 DNA Binding Superfamily AT4G23980 56.785 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa7g5494 AUX_IAA 1.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5494 K14486 - gmx:100779003 1075.85