Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5478 ATGTCCTCTTCATCATCAACTTCCTTTTCACCGGACCAGCAACAACAGCAACAACTCTCTCCTTCCGACCAGCTCTGTTATGTTCATTGCAATTTCTGCGACACTGTTCTCGCGGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACAGTGAGATGCGGTCATTGCACCAACCTTCTCTCCGTTAACATGCGCGCTTTGCTCCTTCCCGCTGCTAATCAGTTTCATCTCGGACACAACTTCTTCAACCCTCAAAATCTTATGGAGGAAATTCGAAATGCACCTTCAACAAACATGATGATGAATCAGCTTCCAAATCCGAACGATTTGATGATGAACACAATGATGAGAGGAGGACATCACGAAGAAATCCCTAAACCTCCTCCGGCAAACCGACCTCCGGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATTAAGGATGAAATTCAACGTATCAAAGCTGGAAATCCTGATATAAGTCACAGAGAGGCTTTTAGTGCAGCTGCAAAAAATTGGGCCCACTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGACTCAGAGGACGTGATTATGAAAGATGGGTTTTTCACACAAGCAAATGTAGGTGTCTCTCCCTACTAG 669 0.4499 MSSSSSTSFSPDQQQQQQLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRALLLPAANQFHLGHNFFNPQNLMEEIRNAPSTNMMMNQLPNPNDLMMNTMMRGGHHEEIPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDSEDVIMKDGFFTQANVGVSPY* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5478 222 PANTHER PROTEIN YABBY 6-RELATED 1 220 IPR006780 GO:0007275
Psa7g5478 222 Gene3D High mobility group box domain 126 182 IPR036910 -
Psa7g5478 222 Pfam YABBY protein 21 186 IPR006780 GO:0007275
Psa7g5478 222 SUPERFAMILY HMG-box 131 180 IPR036910 -
Psa7g5478 222 PANTHER PROTEIN YABBY 4 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5478 Psa-Chr7 471580703 471584519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5478 32 220 C2C2-YABBY Transcription Factor Family AT4G00180 63.507 9.97e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Psa7g5478 YABBY 4.1e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5478 K25796 - gmx:100781267 374.785