Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5405 ATGGAACTATTCTCAACTAATCTCAAGGTCCTTGTCATTCATCATGACACTGTTGTTCTTAATGAAATTCAAGAAATGTGTGATAGATATCATTATGTAGTAACCAAATGCACTTCAGCTTCTTATGCTTTTAATCTTCTCGTGGAAAGGTGTGGTTATTTTGATATGATGCTGATTGATGTTTGTATTGCAAACATGGATTCTTATAGCTTTGTTCAATATGTAACCCTACAACACAAAATCCCTGTCATTGTGATTTCTTCTGATGCGACAAAAAGTTCTGTCCTAAAGTCTATAATTCATGGCGCCTATGAAGATCCTGGATTCTTGAATGCGCAACTCCATAAAGAACCTGGACTTGTTGAAATCTTGGAGACTGATAGTCATAAAGAACATCACGATCTTGGATTCTTGAAGAGCCATCAAGAACATGAAGTTTTTGGAATCATGGAGGGTCTCGGCATGAAAGAAACGGAGAGAGAAGATGATAAAGCTGGAAAAGAAAGAGGTGCAAAAGAGTCGGCTATATGGACGCCGGAACTGCATCAACAGTTTGTAAATGCTGTGAACCAACTTGGCGTAGATGGCAAACCTAGAAAGATTCTGAAAATGATGGGTGTTTCTGGTTTAGCAACAGCACAGAAGTATAGAAATTATTTGAAGAGACCAAAGTCAAAGAAAAGTCCAACATGGTTAGAATTTGAATATGCTAAGTCAATGATAGAACAAGACCAAAGTCCTCAACTCAATTCAACTCTTCAAACTGATAATATCTATGAAACACAACAACATACAAATGATGTTACTACTAATTATCATCAAGTTTCCGACATTGGCTGCAATTATGAAACACAAAAGCTTTCAACTGATGTTGGAGACTATGGAGTCTCGGACATTATGAACGATTTTCCTGATTCAACTCAATCAATGTTACAACAGGACCTAAATTCAACTCTTCAAAGTGATAACAATTATGAAACACAACAACATCCAACAGATGTCGGCGATTATCGAGTCTCGGACATTATGAACAACGATTTTCCTGATCCATCTGACTTGCTCTTTGATTTAGATGATGAGTTAATATCATTAATATTTTATGTCTCGGACATTATGAACAACGATTTTCCTGATCCATCTGACTTGCTCTTTGATTTAGATGATGAGTTAATATCATTAATATTTTAA 1188 0.3586 MELFSTNLKVLVIHHDTVVLNEIQEMCDRYHYVVTKCTSASYAFNLLVERCGYFDMMLIDVCIANMDSYSFVQYVTLQHKIPVIVISSDATKSSVLKSIIHGAYEDPGFLNAQLHKEPGLVEILETDSHKEHHDLGFLKSHQEHEVFGIMEGLGMKETEREDDKAGKERGAKESAIWTPELHQQFVNAVNQLGVDGKPRKILKMMGVSGLATAQKYRNYLKRPKSKKSPTWLEFEYAKSMIEQDQSPQLNSTLQTDNIYETQQHTNDVTTNYHQVSDIGCNYETQKLSTDVGDYGVSDIMNDFPDSTQSMLQQDLNSTLQSDNNYETQQHPTDVGDYRVSDIMNNDFPDPSDLLFDLDDELISLIFYVSDIMNNDFPDPSDLLFDLDDELISLIF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5405 395 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 329 IPR045279 GO:0009736
Psa7g5405 395 Pfam Myb-like DNA-binding domain 177 220 IPR001005 -
Psa7g5405 395 Pfam Response regulator receiver domain 10 104 IPR001789 GO:0000160
Psa7g5405 395 Gene3D - 3 124 - -
Psa7g5405 395 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 6 329 - -
Psa7g5405 395 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 172 214 IPR006447 GO:0003677
Psa7g5405 395 ProSiteProfiles Response regulatory domain profile. 9 131 IPR001789 GO:0000160
Psa7g5405 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 224 IPR017930 -
Psa7g5405 395 SUPERFAMILY CheY-like 7 104 IPR011006 -
Psa7g5405 395 SUPERFAMILY Homeodomain-like 172 222 IPR009057 -
Psa7g5405 395 Gene3D - 170 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5405 Psa-Chr7 466144818 466146848 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5405 4 209 Response Regulator Gene Family AT4G16110 33.766 4.17e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa7g5405 Response_reg 1.2e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5405 - K14491 mtr:MTR_4g021760 177.563