Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5392 ATGGAAAAACACAAGTGCAAATATTGTTATAGAAGTTTCTCTAACGGAAGAGCATTAGGCGGACACATGAGATCACACATGATGAACCTACCCATTCCTCCCAAACCAAACGACTCATCTCCATCACCACCACCGCCACCACCACCACCACAACCACCAACGATTCAACTCAGTTTCGAAGCCGAGTCAGATTCATCTCCTTCATCGTCATCTCTCTATAGGCTAAGAGAGAATCCAAAGAGAAGCTTCATTTTCACAGATCCCAATCAATTCATCGACGCCGGTTCTATAATTCTCCAAGAAAGCAGAGAAAGCGAAACCGAAACCGAGTCGTCGAAAAATCCAACTCGTCCACGATCCAAACGAGTCAAGAAACTCGACACGGCGAAACCGAACGAGTCGGTGCTGAGTTCTTCATCGGATATAACTACCGAAGAAGACATCGCTTTTTGTCTCATGTTGCTTTCTCGCGACAATAACAACAATTGGCGGTCTCGAACACAAACACAAACACAACAGCACAATTATCAATATCATGATCAAGAACAACATCATTATTATGTCGATGAAGATGAAGACGAAGACGACGAAGAAGAAGTCGAAGAAATGGAAGAAGAAGAAGAAAGTGAAGCTGAATCTGAGGAACTGAAACCGTTGAAGAAAGTACGAGGAAGATACAAATGTGACACGTGTAACAAAGTATTTCGATCTTATCAAGCACTTGGAGGACACAGAGCCAGTCACAAGAAAACTAAATTATTTGCTGGCGATTCAACTTCACAACATGATGAGAAAATTAACATCGAAAACGTTAATGTTAATGTTGAAAAGAAAATTCATGAATGTCCTGTTTGTTTTAGAGAATTTTCTTCAGGTCAAGCTCTTGGTGGACATAAGAGAACACATGGTATTGGAACATCATCAGCATCAGCATCAACATCAACAACAACAATAGCAGCGGTTACAGCAGCAGCAACAACAAACGTTGAGGTTGTTGTTCGAAGTTCTGCGAAATTCGGAGATAGTTTGTTAGATCTAAATCTTCCTGCTCCTATGGATGATGGGGATGGTGGTTCTGCGGTTTCCGATGCATAA 1095 0.4164 MEKHKCKYCYRSFSNGRALGGHMRSHMMNLPIPPKPNDSSPSPPPPPPPPQPPTIQLSFEAESDSSPSSSSLYRLRENPKRSFIFTDPNQFIDAGSIILQESRESETETESSKNPTRPRSKRVKKLDTAKPNESVLSSSSDITTEEDIAFCLMLLSRDNNNNWRSRTQTQTQQHNYQYHDQEQHHYYVDEDEDEDDEEEVEEMEEEEESEAESEELKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKTKLFAGDSTSQHDEKINIENVNVNVEKKIHECPVCFREFSSGQALGGHKRTHGIGTSSASASTSTTTIAAVTAAATTNVEVVVRSSAKFGDSLLDLNLPAPMDDGDGGSAVSDA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5392 364 SUPERFAMILY beta-beta-alpha zinc fingers 225 302 IPR036236 -
Psa7g5392 364 Gene3D Classic Zinc Finger 223 302 - -
Psa7g5392 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 302 IPR013087 -
Psa7g5392 364 MobiDBLite consensus disorder prediction 189 212 - -
Psa7g5392 364 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Psa7g5392 364 MobiDBLite consensus disorder prediction 103 129 - -
Psa7g5392 364 MobiDBLite consensus disorder prediction 31 74 - -
Psa7g5392 364 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 357 IPR044303 GO:0006355
Psa7g5392 364 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 357 - -
Psa7g5392 364 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Psa7g5392 364 MobiDBLite consensus disorder prediction 34 55 - -
Psa7g5392 364 MobiDBLite consensus disorder prediction 99 138 - -
Psa7g5392 364 SMART c2h2final6 4 26 IPR013087 -
Psa7g5392 364 SMART c2h2final6 226 248 IPR013087 -
Psa7g5392 364 SMART c2h2final6 280 302 IPR013087 -
Psa7g5392 364 Pfam C2H2-type zinc finger 4 27 - -
Psa7g5392 364 Pfam C2H2-type zinc finger 280 302 - -
Psa7g5392 364 Pfam C2H2-type zinc finger 225 250 - -
Psa7g5392 364 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Psa7g5392 364 Coils Coil 197 217 - -
Psa7g5392 364 MobiDBLite consensus disorder prediction 189 218 - -
Psa7g5392 364 MobiDBLite consensus disorder prediction 56 74 - -
Psa7g5392 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Psa7g5392 364 ProSitePatterns Zinc finger C2H2 type domain signature. 282 302 IPR013087 -
Psa7g5392 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5392 Psa-Chr7 465391780 465393101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5392 1 354 C2H2 Transcription Factor Family AT3G60580 36.314 3.03e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g5392 zf-C2H2_6 5.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5392 - - aprc:113850450 266.544