Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5330 ATGTTGTTTTCCATTCCATTGTTCGTTTTCTTTTCAAGCATTTGCTTTTTAACAGAGCAAATGAAAAATGAAAGTCACGATGAAGAGATTACAACGTTTCAAAATAATAAACAAGCCAATAATGTTGAAACAATGGAAATCTCGAATCATCAAGTAGATGAACCTATTTTGAACTTTCAAAGAAAAGAAATGTTTAAAGAATGTCGAAGAAATCATGCTTCCGGCATTGGAGGCTTCGCTGTTGATGGTTGTTGCGAGTTTTTACCGGCCGGAATTGAAGGTACTATCGAGTTTTTTAAATGTGCTGCTTGTAACTGTCACCGGAATTTTCATCATAAAGAACTTGTCACCGGAGATCTAACTAATTTTCCGGCCAACACCGTCTACTACCCTTCACCGACTCCGATCTCTACAATTTTTCCGATTCATGATTACATCCATATGACTGGCTCGTCAAGGGGGACCATAAATGGCGGTGAAGAAAGGTTGACTAGCTTTAAAAAAAGATTTAGAACAAAGTTCAGTCGTGAACAAAAGGAGAAGATGTTCAATTTTGCTGTGAAATTAGGTTGGAAGGTTCGTAAACAAGATAAGAACGCTGTTGAAAAATTTTGTAATAAAATTGGGGTGAAGTTTCAGGTTTTTAAAGTGTGGATACTTAACAATAAACACACCATTGGAAAACAAACTTAG 693 0.3622 MLFSIPLFVFFSSICFLTEQMKNESHDEEITTFQNNKQANNVETMEISNHQVDEPILNFQRKEMFKECRRNHASGIGGFAVDGCCEFLPAGIEGTIEFFKCAACNCHRNFHHKELVTGDLTNFPANTVYYPSPTPISTIFPIHDYIHMTGSSRGTINGGEERLTSFKKRFRTKFSREQKEKMFNFAVKLGWKVRKQDKNAVEKFCNKIGVKFQVFKVWILNNKHTIGKQT* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5330 230 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 65 114 IPR006456 -
Psa7g5330 230 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 167 223 IPR006455 -
Psa7g5330 230 SUPERFAMILY Homeodomain-like 158 228 IPR009057 -
Psa7g5330 230 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 229 - -
Psa7g5330 230 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 39 229 - -
Psa7g5330 230 Pfam ZF-HD protein dimerisation region 64 114 IPR006456 -
Psa7g5330 230 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Psa7g5330 230 Gene3D - 152 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5330 Psa-Chr7 462607828 462608724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5330 65 228 ZF-HD Transcription Factor Family AT5G65410 42.697 6.20e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa7g5330 ZF-HD_dimer 4.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5330 - - mtr:MTR_8g069080 233.802