Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5286 ATGAGTAGCTTATCATTGAATCAAACAAGTGGTTTGGCTTTAAGAGATTGTGCTAAACTCTATGAGGAGAGTGAGTTTAGGCTTAGGGATATGATGTTTGAAAAGAGGGGTTATAGTAAAGATGATGCTCTTATATGGGTGAGTGCATTGATGACAAATCATAGGACTTGTTTGGATGGGTTGAAGGAAAAAGGGTATGTTCAAGGTGATCATGTTTTGGGTAGAAACTTGACAACTTTGCTTGGCCAAATGCTTGTTTTGTATTCAAATAACAAAGTCAAAGGCAAAGAAGAATTTCAAAGGACTACAATATTAGAAGAAAATGATGGACTATTAGAATCATGGAGTGTTGAAAACCATGAAGCAGATTTCACTGTCGCACAAGATGGTTCTGGAAGTTATAGAACAATTAAAGAAGCAGTTAATGCACTTGCTTCAAGGGGGCATAATCGTCCTTCAAGAGTTGTTATACATGTTAAAGCCGGAGTTTACAATGAAAAAGTTGAGATCGGAAGTAAGTTGCATAATGTTATGTTTGTCGGAGATGGAATTGATAAGACTGTTGTTACCGGAAATAGGAATGTTCTTCATGGTGGAACCACTCTTAACTCCGCCACATTTGATGTATCCGGCGATGGATTTTGGGCGAGAGATATGACATTTGAGAACACAGCCGGACCCCAAAACCACCAAGCAGTAGCCCTCAAAGTAAGTTCCGACTTATCGGTCTTCTACAGATGCAGCTTCAAAGCCTACCAAGACACGCTCTACCTATTCTCGAATCGACAATTCTACCGGGACTGTCGCATATACGGAACAATCGACTTCATATTCGGCGACGCAGCCGCGGTACTCCAAAACTGCGACATTTTCATTCGAAAACCAATGAGTTACCAATCAAACTTCATCACCGCGCAAGGACGAGACAATCCCAACGAACCGACCGGGTTTTCGATACAAACCTCTAGGGTTAGGCCCGATGCGGAGTTCGCAACGGTGAAGGATTCTGTGAAGACTTTTTTAGGTAGGCCTTGGAAGAAATACTCGAGGACGGTGTTTCTTAAAAGTGATCTGGATGGTTTGATTCATCCTAAGGGTTGGGGTGAATGGGAGGGTAGTTTTGCAATTTCATCTTTGTTCTATGGTGAATATATGAATACTGGAAATGGTGCTTCTACTGAAAATAGGGTTAATTGGCCTGGTTTTCATGTGTTGAAGAGTGCTGAGGAAGCTTCACCTTTTACAGTGACTAGATTTTTGCAAGGTGGAAATTGGATTCCAGATTCTGGGGTGCCATTTATGTCTGGAATTTGA 1314 0.414 MSSLSLNQTSGLALRDCAKLYEESEFRLRDMMFEKRGYSKDDALIWVSALMTNHRTCLDGLKEKGYVQGDHVLGRNLTTLLGQMLVLYSNNKVKGKEEFQRTTILEENDGLLESWSVENHEADFTVAQDGSGSYRTIKEAVNALASRGHNRPSRVVIHVKAGVYNEKVEIGSKLHNVMFVGDGIDKTVVTGNRNVLHGGTTLNSATFDVSGDGFWARDMTFENTAGPQNHQAVALKVSSDLSVFYRCSFKAYQDTLYLFSNRQFYRDCRIYGTIDFIFGDAAAVLQNCDIFIRKPMSYQSNFITAQGRDNPNEPTGFSIQTSRVRPDAEFATVKDSVKTFLGRPWKKYSRTVFLKSDLDGLIHPKGWGEWEGSFAISSLFYGEYMNTGNGASTENRVNWPGFHVLKSAEEASPFTVTRFLQGGNWIPDSGVPFMSGI* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5286 437 Gene3D - 117 437 IPR012334 -
Psa7g5286 437 ProSitePatterns Pectinesterase signature 2. 270 279 IPR033131 -
Psa7g5286 437 Pfam Plant invertase/pectin methylesterase inhibitor 10 69 IPR006501 GO:0004857
Psa7g5286 437 PANTHER PECTINESTERASE 17 435 - -
Psa7g5286 437 SUPERFAMILY Pectin lyase-like 122 436 IPR011050 -
Psa7g5286 437 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 6 67 IPR035513 -
Psa7g5286 437 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 89 IPR035513 -
Psa7g5286 437 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 17 435 - -
Psa7g5286 437 CDD PMEI-like_4 13 89 - -
Psa7g5286 437 Pfam Pectinesterase 123 422 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5286 Psa-Chr7 460791177 460794121 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5286 12 437 Carbohydrate Esterase AT3G60730 55.385 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5286 K01051 - gmx:100792852 669.463