Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5284 ATGGCTTCATTTCCTTTGGTAACAACTCTTTTAATTTTATTTCCCTTTCTTTTCTCAACTCTTGTTTATGGTTACTCTCTAAGTTCCATAAAATCATGGTGTAACCAAACCCCTTATCCTCAAACATGTGAGTATTACTTAACCAACAATGCTTACAACCAAACAATTAAGAGTAAATCCGACTTTTTCAAGGTTTCGCTTCAACTCGCGATCCAGCGAGCACGAAAGGGCGAAGAAAATACTCATTCTCTCGGCTCGAAGTGCCGTAACGCGCAAGAAAAAGCCGCTTGGGCTGATTGTCTTGAACTCTATGATTTCACGGTCCAAAAGCTTACTCAAACTACCCACCCTAATTGCAAACAAACCGATTCTCAAACATGGCTTAGCACGGCTTTGACGAATCTCGAAACATGCAAAAATGGATTTTATGACCTAGGTGTCACAAACTATGTCTTACCTTTGATGTCAAACAATGTAACAAAGTTGTTAAGTAACACCTTGTCTCTCAACAAGGTTCCTTACCAAAAACCTAGTTACAAAGACGGATTTCCAACATGGGTTAAACCCGGCGATCGGAAGCTTCTTCAAACATCCTCGGCCGCCTCGAAGGCGAATGTCGTCGTCGCTAAAGACGGTTCCGGTAAATACACAACCGTGAAGGCGGCGACCGATGCCGCGCCGAGTGGTAGTGGAAGGTATGTGATATATGTGAAGGCTGGTGTCTACAATGAACAAGTTGAGATCAAAGCAAAGAATGTCATGTTGGTGGGAGATGGTATTGGAAAGACTATAATCACAGGTAGCAAAAGTGTTGGAGGTGGCTCCACTACCTTCCGTTCAGCAACCGTTGCTGTGGTTGGTGATGGATTTATTGGTCAAGACATCACATTTAGAAACACTGCTGGAGGAGCAAACCATCAAGCTGTTGCATTCCGTTCTGGCTCAGATCTTTCAGTATTTTACAGATGCAGTTTCGAAGGTTATCAAGACACACTATATGTTCATTCGGAAAGACAATTTTATAGAGAATGCAACATCTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCGGTAGTGTTGCAAAGTTGCAACATTATCGCGAGAAACCCTCCTCAAAAAACAATCACTGTTACGGCTCAAGGCCGAACCGATCCAAACCAAAACACCGGAATAATAATTCACAACTCTAAGGTCACGGCCGCGTCGGACCTAAACCCTAGCTCGGTTAAGTCGTACCTCGGCCGGCCGTGGCAAAAATATTCAAGAACCGTTTTCATCAAAACTTCTATCGATGGTTTTATTAACCCTGCTGGTTGGTTGGAATGGAGTGGTAACTTTGCTTTGGATACTTTGTATTATGCTGAATATGGTAATACAGGTGCAGGCTCTTCAACTTCTAATAGGGTTTCATGGAAAGGTTACCATGTTCTTACCAGTGCTTCTCAAGCCACACCATTCACCGTCGGAAATTTCATTGCCGGTAATTCTTGGTTACCGGGCACCGGCGTGCCTTTCACCGCCGGACTCTAA 1533 0.4397 MASFPLVTTLLILFPFLFSTLVYGYSLSSIKSWCNQTPYPQTCEYYLTNNAYNQTIKSKSDFFKVSLQLAIQRARKGEENTHSLGSKCRNAQEKAAWADCLELYDFTVQKLTQTTHPNCKQTDSQTWLSTALTNLETCKNGFYDLGVTNYVLPLMSNNVTKLLSNTLSLNKVPYQKPSYKDGFPTWVKPGDRKLLQTSSAASKANVVVAKDGSGKYTTVKAATDAAPSGSGRYVIYVKAGVYNEQVEIKAKNVMLVGDGIGKTIITGSKSVGGGSTTFRSATVAVVGDGFIGQDITFRNTAGGANHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQSCNIIARNPPQKTITVTAQGRTDPNQNTGIIIHNSKVTAASDLNPSSVKSYLGRPWQKYSRTVFIKTSIDGFINPAGWLEWSGNFALDTLYYAEYGNTGAGSSTSNRVSWKGYHVLTSASQATPFTVGNFIAGNSWLPGTGVPFTAGL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5284 510 SUPERFAMILY Pectin lyase-like 199 509 IPR011050 -
Psa7g5284 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 173 IPR035513 -
Psa7g5284 510 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Psa7g5284 510 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Psa7g5284 510 Gene3D - 199 510 IPR012334 -
Psa7g5284 510 PANTHER PECTINESTERASE 5 509 - -
Psa7g5284 510 CDD PMEI-like_3 32 171 - -
Psa7g5284 510 Pfam Pectinesterase 205 496 IPR000070 GO:0030599|GO:0042545
Psa7g5284 510 PANTHER PECTINESTERASE 5 509 - -
Psa7g5284 510 SMART PMEI_2 25 169 IPR006501 GO:0004857
Psa7g5284 510 Pfam Plant invertase/pectin methylesterase inhibitor 29 169 IPR006501 GO:0004857
Psa7g5284 510 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 172 IPR006501 GO:0004857
Psa7g5284 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 172 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5284 Psa-Chr7 460676107 460680009 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5284 1 510 Carbohydrate Esterase AT2G45220 65.437 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5284 K01051 - gmx:100794948 854.358