Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5279 ATGAAAAGTCATCATAATCATCTTCATTCTTCTTTTGCTTCTGATAACAACAATTCTATCATACACTTAAACTACAATCACCGGTTCACAAAAAACATGGCGATATCACCTCAAACGTTCCCAACAACTAAACGACCACCTTCAGAGTCGTCGTTTATCTCTCCAAACCTAACCAACTTTAGTCTTCTCCACTCTCTGTTACACCTCACGTACCAAATAGGTTCATTAAACGCAGCTCCTTGGTGTCGTTTTCTGTTGAACAAAACTTCCTCTTCCACCATCCGTAAAACGCAGCTACTTGGCGTCGTTTTCGAAGAACTTATTCACAATTCCAATTCAATTTCAATTTCAATTTCAACAACTCTATGTTCAAACTCTTTCGTTCTTTGTCTTGAAGAAATGTACATAGTGTTGCACAGAATTAAAACCTTGATTGAAGATTGTTCCAATGGAAGCAAACTCTCTGTTTTGATGCAAATTGAAACCGTTGCTGATAATTTTAACAAACTCACCGGAGAATTATCAACGCTTCTAGATGTTTTTCCGATTCAACAGTTTAGCCTCAACGACGACGTTTTGGAGATTGTTCATCTCATCAGAAAACAGTGTTCAGAATCAAAGCTTCTATTAGGGGAAGAACAAGTTAACCTCCGAAACGATGTCGTTTCTGTTCTGGAAGGGATTAAAAGAGAGATTGTACCGAGTCAGGAAAAGCTATCTTCGATTTTCGAGAAATTGGAGATCCGCGATTCATCAAGCTGCAGAAGTGAGATAGAAAATCTTCAACAAGAGATTCAGAATCGAAGCGAAGAACAATCGAAATCCGAGATTGTTGCTTTGATCGGCCTCGTTCGTTATACTAAGTGTGTTCTTTTCGGAGCATCGACGCCGTCGACGAGAAACGAGACGCTACGGCGGAATCAGTCGTTGGATGTGGTTGTTCCGGCGGATTATCGTTGTCCGATAAGCTTAGAACTGATTCGAGATCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTGCCTCCATCAAGTTATGGATTGAATCTGGACACAACACGTGTCCTAAAACAGGTCAGAGCCTGACCCACACGGATTTAATACCGAACCATGCTTTGAGAAACGTGATAGCTTTGTGGTGCCGTGAACAGAAAATTCCGTTTGAAGATGAAACGGTTACCGTTAAAATAAACGGCGGTGTGACGAATAAAACAGCATTTGAAGCTGCAAGAATGACGGCGTTGTTTTTAGTCAACAAGTTGACGTTGACTAACGGCTCTTTAGTTTCAGGGTCACAGACTTTGGAAGATACAAACGCCGTCGTTTATGAGCTTCGCGTATTAGCGAAAACTGATTCAGAGAGCCGAGCCTGTATAGCCGAAGCTGGTGCCATAGAGCTTTTGGTTCGGTTTTTAAGCTATGAAGTTGGCTCGCAACACCCGAGCCTACAAGTTAACGCCGTGACAACGATTTTAAATCTTTCGATACTTGAAGCGAACAAGACAAGGATAATGGAAAGTGACGGCGCGTTAAACGGAATAACGGAGGTTTTGAGATCAGGTGCCACGTGGGAAGCAAAATCGAATGCAGCGGCAACGGTGTTTAGTTTAACGGGAGTTGTTGCTTTTAGAAAACGGTTAGGGAGGAAGACACGTGTCGTTAGTGGATTGGTGGAGTTGGCGAAGTGTGGGCCTGAGGGAGCGAAGCGGGACGCGCTTGCGGCGATTTTAAATCTGGCGTCGGATCGTGAGACGGTGGCGAGGTTAGTTGAGAGTGGTGCTGTGCAGATGACGGCGGAGATTATGACGGGAATGCCGGAGGAGGCTGTGACGATACTTGAAGCAGTGGTTAAGCGTGGAGGATTAGTGGCGGTGGCGGCGGCTTTTATGGGGATAAAGAAATTGGGGAAGGTGTTGAGGGAGGGATCGGAGAGAGCAAGAGAGAGTGCGGCGGCGACGCTTGTGACGATGTGTAGGAAAGGTGGATCGGAGATTGTGACTGAGCTTGCAGCGATTCATGGCGTGGAAAGGGTGATTTGGGAGTTGATGGCTGTGGGGAGTGTGAGAGGGAGAAGAAAGGCGGCAACGCTGTTGAGGATTCTACGGCGTTGGGCGGCGGGTTTGGACGGTGGTGAAACGGAAGGATTTTCAACAACCAATGCTTCTTCTGTTAGTGCGTCAACTACCGTGGTTGTTCCAACTACCACTTCATCAGCGCAGTAG 2223 0.4566 MKSHHNHLHSSFASDNNNSIIHLNYNHRFTKNMAISPQTFPTTKRPPSESSFISPNLTNFSLLHSLLHLTYQIGSLNAAPWCRFLLNKTSSSTIRKTQLLGVVFEELIHNSNSISISISTTLCSNSFVLCLEEMYIVLHRIKTLIEDCSNGSKLSVLMQIETVADNFNKLTGELSTLLDVFPIQQFSLNDDVLEIVHLIRKQCSESKLLLGEEQVNLRNDVVSVLEGIKREIVPSQEKLSSIFEKLEIRDSSSCRSEIENLQQEIQNRSEEQSKSEIVALIGLVRYTKCVLFGASTPSTRNETLRRNQSLDVVVPADYRCPISLELIRDPVVVATGQTYDRASIKLWIESGHNTCPKTGQSLTHTDLIPNHALRNVIALWCREQKIPFEDETVTVKINGGVTNKTAFEAARMTALFLVNKLTLTNGSLVSGSQTLEDTNAVVYELRVLAKTDSESRACIAEAGAIELLVRFLSYEVGSQHPSLQVNAVTTILNLSILEANKTRIMESDGALNGITEVLRSGATWEAKSNAAATVFSLTGVVAFRKRLGRKTRVVSGLVELAKCGPEGAKRDALAAILNLASDRETVARLVESGAVQMTAEIMTGMPEEAVTILEAVVKRGGLVAVAAAFMGIKKLGKVLREGSERARESAAATLVTMCRKGGSEIVTELAAIHGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFSTTNASSVSASTTVVVPTTTSSAQ* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5279 740 Pfam U-box domain 314 385 IPR003613 GO:0004842|GO:0016567
Psa7g5279 740 Gene3D - 427 630 IPR011989 -
Psa7g5279 740 Pfam Armadillo/beta-catenin-like repeat 452 495 IPR000225 GO:0005515
Psa7g5279 740 Coils Coil 251 271 - -
Psa7g5279 740 CDD RING-Ubox_PUB 318 360 IPR045210 -
Psa7g5279 740 PANTHER U BOX DOMAIN-CONTAINING 44 719 - -
Psa7g5279 740 SMART Ubox_2 317 380 IPR003613 GO:0004842|GO:0016567
Psa7g5279 740 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 44 719 - -
Psa7g5279 740 ProSiteProfiles U-box domain profile. 313 387 IPR003613 GO:0004842|GO:0016567
Psa7g5279 740 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 509 IPR000225 GO:0005515
Psa7g5279 740 SUPERFAMILY ARM repeat 436 701 IPR016024 -
Psa7g5279 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 394 IPR013083 -
Psa7g5279 740 SUPERFAMILY RING/U-box 310 388 - -
Psa7g5279 740 SMART arm_5 452 496 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5279 Psa-Chr7 460331284 460334280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5279 44 736 U-box Gene Family AT5G01830 54.011 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5279 - - cam:101506886 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5279 7 460331284 460334280 Psa7g5279 7 460331284 460334280 ECH