LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa7g5247	ATGGAGCTTGATTTGAATCAGGAGCCTTTGGATCGAAGTAGTAGTTCAGTAGTTGAATTTGATTCTGTATTGGACGAACTCGAAGCTGCCGAGGGAAATATTCGGAACCGAATAAGACACCTTGAAGAGATTACTTCGAGAGCGAGGCAGAGTCGGAGGTTGCCGCGGATGATGATGAATTCGCCGATTCGGATAACTAATTTTACGGGAGAAGCGATGACTGATGATGATGTTCGAGGTGAAGAAGAAAGGGAGGAGCAGAATGATGTTGAAAAATGTGGAAAAAGAAAGAGTGCTCATTTAGTAGCGAAAGCGTTGGGGGTGGAAGAGATTGATGATGGTAAAGTGGAGGAGAGTAGTGAGAGTTTTTATGATTGTAATATATGCTTGGATGTTGCGAGAGATCCTGTTTTGACGTGTTGTGGGCATTTGTTTTGTTGGCCGTGTTTCTATCAGTTATCGTATGTTTATTCGAAAGCGAAGGAATGTCCTGTTTGTAAAGGAGAGGTTACTGAATCGGGTATTATTCCGATTTATGGGAAAGGTAGTGTTGGTGGTGATTGTCAAATGGAAATGAAAGAAGCTGGTTTGAGAGTTCCTCCTCGACCTAAGGCTCCTAGAATTGAGAGTATTAGACAGAAGTTGATAACCCGAGGTGCATCTTCTTCTTCTATTGTCCAAAGCATTCGGCGGTTTCATAATCGAATTGGTGGATTTGGAGAACAGGCTCAGTTAGAAAGCCCTAATACCAGAGGTGATAGAAATAATGGTACGCTCGTTCGTTCTCGCGCGCAGACTGATATTAATCAACACGCAGGCACTCATCAAGTTTCAAGGATGCTAGAACAAGGAGCTTCTTCATTTTCATCGCTTTCATCAGCGATAAATTCTGCAATGGATTCTGCAGAAAGATTAGTTCAGGACCTTGAATCTTATATCCACGGCCACAATATAGGAGGAAGCAGAGAGTTAAACCATCTTGCTGAAAATAGAAGTTCAATGTTTAGTTTCGCTGCTACAAACCGCTCGGAGAGTCGTGCTCAAGATGTTGTTGATGTGGCCAATTCTGCTGCTGCAGCAGCTAGGAATGTTGACAATATTGCTGCTAGTGGTTCAGAAATTCAGACAACTGATAAAGACATATATATTAGTCCGTTAGACCCTTCTTCGTCAAACAGTAGAAGAAGAAACGGTGCTTCAAGACAAGTTTCAAATGAACCCAGCAGAAGAAGAAGATTGAGATGA	1245	0.4225	MELDLNQEPLDRSSSSVVEFDSVLDELEAAEGNIRNRIRHLEEITSRARQSRRLPRMMMNSPIRITNFTGEAMTDDDVRGEEEREEQNDVEKCGKRKSAHLVAKALGVEEIDDGKVEESSESFYDCNICLDVARDPVLTCCGHLFCWPCFYQLSYVYSKAKECPVCKGEVTESGIIPIYGKGSVGGDCQMEMKEAGLRVPPRPKAPRIESIRQKLITRGASSSSIVQSIRRFHNRIGGFGEQAQLESPNTRGDRNNGTLVRSRAQTDINQHAGTHQVSRMLEQGASSFSSLSSAINSAMDSAERLVQDLESYIHGHNIGGSRELNHLAENRSSMFSFAATNRSESRAQDVVDVANSAAAAARNVDNIAASGSEIQTTDKDIYISPLDPSSSNSRRRNGASRQVSNEPSRRRRLR*	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa7g5247	414	CDD	RING-HC_AtRMA_like	124	168	-	-
	Psa7g5247	414	MobiDBLite	consensus disorder prediction	379	414	-	-
	Psa7g5247	414	MobiDBLite	consensus disorder prediction	379	404	-	-
	Psa7g5247	414	SMART	ring_2	126	166	IPR001841	-
	Psa7g5247	414	Pfam	Zinc finger, C3HC4 type (RING finger)	125	172	-	-
	Psa7g5247	414	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	81	201	IPR013083	-
	Psa7g5247	414	Coils	Coil	24	44	-	-
	Psa7g5247	414	ProSiteProfiles	Zinc finger RING-type profile.	126	167	IPR001841	-
	Psa7g5247	414	PANTHER	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	5	349	-	-
	Psa7g5247	414	SUPERFAMILY	RING/U-box	120	179	-	-
	Psa7g5247	414	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	5	349	IPR045103	GO:0005783\|GO:0006511\|GO:0061630

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa7g5247	Psa-Chr7	459221875	459224245	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa7g5247	105	361	C3H Transcription Factor Family	AT3G58030	35.314	1.08e-37	140