Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5245 ATGCAACCAAGGGCAAGTACTGGAGCTGGTTACCGTTTTAGTGTATCTAGTACGCCTAGCAATTCAAGTGGAGGATCTGATCCAGATGATAATGAGTCACAAGGTGAGGTTTTCATATGGGGAGAGGTTTTTGCAGACGGGGTTCCTTCCAAGACAGATGTGTTGATCCCTAAGCTGTTAGAGTCGCATGTTCTTCTTGATGTTCGTAACATTGCATCTGGTGTGAGTCACCTTGCTATATTAAACAAGAAAGGGGAGGTTTTTACTTGGGGAGAAGAGTCTGGGGGTAGACTTGGTCATGGAATTGATAAAGGTTTTAGTAAGCCTCATCTAGTTAAGAATCTTCAAGATGTTACTATGGATATTGTTGCATGTGGAGATTTTCATACATGTGCTGTGTCTAAATCTGAAGAATTTTTCACATGGGGTGATGGTACACATAATGTTGGACTTCTTGGACATGGTAATGAGGCTAGCCACTGGATACCAAAGAGTGTCAATGGCTTTTTGGATGGACTTCAAGTTGTATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCAAATGGAAAATTATTTACCTTTGGTGATGGAACATTTGGTGTTTTAGGCCATGGTGATCAAGAGAGTGTATTGTATCCAAAGGAAGTACAACTATTAGGTGGACTGAGGACTATCAAGGTTGCTTGTGGAGTATGGCATACTGCAGCTATTGTTGACGTTGTTTTTCAATCTGGTTCAAATGTTTCATCATGGAAACTTTTCACATGGGGTGATGGTGACAAACATTGTTTAGGCCATGGAAACAAGGAAACCTATCTTCAACCGAAACGTGTTTCGCCTCTTATTGAATATAATTTCCAGCAGATAGCATGTGGACACACCATGACTGTTGCTCTCACTACATCTGGTCATGTATTTACAATGGGAAGCACTGAAAATGGTCAATTAGGAAATCCAAATTCTGCCGGGAAAGTACCTACTTTAGTCCAAGATAAGTTACTAGGTGAATTTGTTGAGGAAATATCATGCGGAGCACACCATGTTGCTGTTTTGACATCAAGAAATGAAGTATATACGTGGGGAAAAGGTTCTAATGGAAGACTAGGACATGGTGACACAGATGAGAGAAAATCTCCTACACTTGTGATAGCCTTGAAAGATAGGCATATAAAAAACATCTCATGTGGTTCAAATTTTACATCTTGTATATGCATTCGTAAATCGGTCACTGGAACTGACCAACCTATTTGCTTTGGATGTAAACAAGCATTTGGTTTAACAAGAAAAAGACACAATTGTTACAATTGTGGATTGGTTTTCTGTCATACATGTAGTTCTAAAAAGTCATCCAAAGCTGCATTGGCTCCAACATTAGAAAAACCTCATCGTGTGTGTGATATTTGTTATACTAAGCTTAAAGTTGTTGTTGACACCAATGATCCTTCAAAGTTAAATGGAAAGGCTACTCCTTCTCACTGTTCCACAAATGGTAGGGAAAGATTAGACCAAGGTATTTTAAGGTCTACAAGAACTCTGTTTTCTTCTTTTACCGAACCAATGAAGTACCTTGAAATAAGGAATAATAAGCCTGGAAATGGATATGGTTCTACTTCTTTCATGAGAGCTTCTTTAGTTCCATCTCTTTTGCAATTGAAAGATATCGCTTTTCCAAGTTCATTGAGTTCTATTCAAAGTGTTTTGAAGCCTTCTACTCCTCCTAGTTCATCACAAAATTCTACATCCCCATACACATGTGGATCAGGTCCTCCTCCACCATATGTCAGTCAAAGATTTTCTGGTGGTCTTATCAATAGTTTGAGCAGGACAAGTGATGTTCTTAATAAAAAAGTTTCAAATTTGCAGAGCCAAATTCGAGGATTGGAGGAGATAAGTGACATGAAAGATGTGGAAATTCAGAAGCTTCAGAGAAAGACTACAGATGTTATTGCCTGGGTTGCAGTGGAGTCTTCTTGTCATAGAGAAGCAAAAGAATTTATTGAATCTACTAAACATCAGTTGAAGGAAATTACTGAGAAGCTACCAGCAGAAATTCCAGAAAGTAATATTTTGAGTACTATCCATACACGAGCTGAAAATTTTCTGAAAGAATTATTTGAATCGGAAACATCAGAGTTGGAGTCCAAGCAAGAAAGTGCACCTGACATATTTGCTGCAGTTAATGATGACACTTCTAAACTAGAAAATATCAGACTAGTAGAAAATGCCGATGTTTTAGAAGTTGACTCTTGTCTAGATGAATTAAAGTTAGAGTGTTCGCAACAAAATGCACATGACATGTCCGCTGCAGATAACAACGCCTCTAAATTAGAAAATATCAGATTAGTTGAAAATGGCGACATTGTAGAAGTTGACTCTTGTCTAGATGAATCAAAGTTAGCGTGTTTGCAACAAAATGCACTTGATATATCTACCACAGCTAGTGGCAATTTTGAACTACAGGATCATAGACTAGATGAAAATGCCAACATTGTAGAAGTTGACTCTTGTCTAGATGAATCAAAGTTAGAGTATTTGCAACAAAATGCACATGACGTATCTGCTGCAGATAATGATCCTTGTCTAGATGAATCAAAGTTAGAGTGTTTGCAACAAAATGCACATGACGTATCTGCTGCAGATAATGACTCTTGTCTAGATGAATCAAAGTTAGAGTGTTTGCAACAAAATGCACATGACGTATCTGCTGCAGATAATGACTCTTGTCTAGATGAATCAAAGTTAGAGTGTTTGCAACAAAATGCACATGACGTATCTGCTGCAGATAATGACTCTTGTCTAGATGAATCAAAGTTGTGTTTGCAACAAAATGCACATGACGTATCTGCTGCAGATAACGACTCTTCTAAACTAGACAATATCAGACTAGTAGAACATGCCGACATTGTAGAAGTTGATTCTTGTCCAGATGATATAACTACCTCAGATAGTGACACTTCTAAACTGCAAGAACACATTCATGAAAAGATTGACAAGACTGCAAGACGTGATCAATCTGAGACTGGAATAAATGTTCGTCATGAAAGTAATGGATCGTCTATATCTTGTGTTGGAGAAGTGATGTCACCCCAACGTTCAGAAAATGGTTCAATATCAGGGGACAGTTCAAGAGATGGGAGTCTACAAGAAACACAAGTCTTTGAAAAATTTGAGTCTGGTGTTTATGTGTTACTCAAGCTACGACCTGATGGAATCAAAATTTTTAAAAGAGTTAAATTCAGTAAGCGAAGGTTCTCTGAAAGTCGAGCAGAAGAATGGTGGAGCCAAAACAAAGGTAGAGTTCTTAGGAAATACTGTCCACGCCATCAGAAGCAAAATGGATCATGTAACATTACATCAAATGTTAAAGAAAATATTGAATCATCGATTTCTTAA 3402 0.3801 MQPRASTGAGYRFSVSSTPSNSSGGSDPDDNESQGEVFIWGEVFADGVPSKTDVLIPKLLESHVLLDVRNIASGVSHLAILNKKGEVFTWGEESGGRLGHGIDKGFSKPHLVKNLQDVTMDIVACGDFHTCAVSKSEEFFTWGDGTHNVGLLGHGNEASHWIPKSVNGFLDGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVLYPKEVQLLGGLRTIKVACGVWHTAAIVDVVFQSGSNVSSWKLFTWGDGDKHCLGHGNKETYLQPKRVSPLIEYNFQQIACGHTMTVALTTSGHVFTMGSTENGQLGNPNSAGKVPTLVQDKLLGEFVEEISCGAHHVAVLTSRNEVYTWGKGSNGRLGHGDTDERKSPTLVIALKDRHIKNISCGSNFTSCICIRKSVTGTDQPICFGCKQAFGLTRKRHNCYNCGLVFCHTCSSKKSSKAALAPTLEKPHRVCDICYTKLKVVVDTNDPSKLNGKATPSHCSTNGRERLDQGILRSTRTLFSSFTEPMKYLEIRNNKPGNGYGSTSFMRASLVPSLLQLKDIAFPSSLSSIQSVLKPSTPPSSSQNSTSPYTCGSGPPPPYVSQRFSGGLINSLSRTSDVLNKKVSNLQSQIRGLEEISDMKDVEIQKLQRKTTDVIAWVAVESSCHREAKEFIESTKHQLKEITEKLPAEIPESNILSTIHTRAENFLKELFESETSELESKQESAPDIFAAVNDDTSKLENIRLVENADVLEVDSCLDELKLECSQQNAHDMSAADNNASKLENIRLVENGDIVEVDSCLDESKLACLQQNALDISTTASGNFELQDHRLDENANIVEVDSCLDESKLEYLQQNAHDVSAADNDPCLDESKLECLQQNAHDVSAADNDSCLDESKLECLQQNAHDVSAADNDSCLDESKLECLQQNAHDVSAADNDSCLDESKLCLQQNAHDVSAADNDSSKLDNIRLVEHADIVEVDSCPDDITTSDSDTSKLQEHIHEKIDKTARRDQSETGINVRHESNGSSISCVGEVMSPQRSENGSISGDSSRDGSLQETQVFEKFESGVYVLLKLRPDGIKIFKRVKFSKRRFSESRAEEWWSQNKGRVLRKYCPRHQKQNGSCNITSNVKENIESSIS* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5245 1133 CDD FYVE_like_SF 420 472 - -
Psa7g5245 1133 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 942 980 - -
Psa7g5245 1133 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 980 1113 - -
Psa7g5245 1133 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 758 844 - -
Psa7g5245 1133 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 759 - -
Psa7g5245 1133 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 758 844 - -
Psa7g5245 1133 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 759 - -
Psa7g5245 1133 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 980 1113 - -
Psa7g5245 1133 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 942 980 - -
Psa7g5245 1133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 483 IPR013083 -
Psa7g5245 1133 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Psa7g5245 1133 Gene3D - 148 252 IPR009091 -
Psa7g5245 1133 Gene3D - 14 147 IPR009091 -
Psa7g5245 1133 Pfam FYVE zinc finger 416 475 IPR000306 GO:0046872
Psa7g5245 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Psa7g5245 1133 MobiDBLite consensus disorder prediction 570 587 - -
Psa7g5245 1133 SUPERFAMILY RCC1/BLIP-II 34 410 IPR009091 -
Psa7g5245 1133 Pfam Transcription factor regulating root and shoot growth via Pin3 1053 1107 IPR013591 -
Psa7g5245 1133 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Psa7g5245 1133 MobiDBLite consensus disorder prediction 1 32 - -
Psa7g5245 1133 MobiDBLite consensus disorder prediction 570 591 - -
Psa7g5245 1133 Coils Coil 606 633 - -
Psa7g5245 1133 MobiDBLite consensus disorder prediction 1 30 - -
Psa7g5245 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Psa7g5245 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Psa7g5245 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Psa7g5245 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 359 406 IPR000408 -
Psa7g5245 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Psa7g5245 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Psa7g5245 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 84 133 IPR000408 -
Psa7g5245 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Psa7g5245 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Psa7g5245 1133 SUPERFAMILY FYVE/PHD zinc finger 414 486 IPR011011 -
Psa7g5245 1133 SMART fyve_4 409 477 IPR000306 GO:0046872
Psa7g5245 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Psa7g5245 1133 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Psa7g5245 1133 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Psa7g5245 1133 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Psa7g5245 1133 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Psa7g5245 1133 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Psa7g5245 1133 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Psa7g5245 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Psa7g5245 1133 ProSiteProfiles BRX domain profile. 1053 1108 IPR013591 -
Psa7g5245 1133 Gene3D - 253 411 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5245 Psa-Chr7 458905275 458913539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5245 979 1107 Major Intrinsic Protein MIP AT1G31880 31.111 4.52e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5245 - - mtr:MTR_4g029410 1394.02