Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5239 ATGCCTCCCAAGCTCGACCCATCCCAAGTCGTCGAAGTTTACGTCCGCGTCACCGGAGGTGAAGTCGGAGCAGCGAGTTCCCTCGCTCCCAAGATCGGTCCCCTCGGTCTCTCCCCGAAAAAGATCGGAGAAGACATCGCTAAGGAAACCGCCAAGGACTGGAAGGGTCTTAGGGAACCAGAGCGTGACAGGAAGAAGACGAAGAACATCAAGCATAACGGTAACATTTCTCTTGACGATGTTATTGAAATTGCTAAGATTATGAAACCTAGGTCGATGGCGAAGGAGCTTGCTGGAACTGTGAAGGAGATCCTGGGGACGTGTGTCTCGGTTGGATGCACTGTTGATGGAAAGGATCCCAAGGATTTGCAGCAGGAAATCAATGATGGTGATGTTGAAATCCCTCAGGATTGA 414 0.5097 MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLREPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEIPQD* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5239 137 SUPERFAMILY Ribosomal protein L11, C-terminal domain 63 120 IPR036769 -
Psa7g5239 137 Pfam Ribosomal protein L11, N-terminal domain 13 58 IPR020784 -
Psa7g5239 137 PANTHER 60S RIBOSOMAL PROTEIN L12 57 137 - -
Psa7g5239 137 PANTHER 60S RIBOSOMAL PROTEIN L12 1 58 - -
Psa7g5239 137 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 58 IPR036796 -
Psa7g5239 137 PANTHER 60S RIBOSOMAL PROTEIN L12 1 58 IPR000911 GO:0003735|GO:0005840|GO:0006412
Psa7g5239 137 PANTHER 60S RIBOSOMAL PROTEIN L12 57 137 IPR000911 GO:0003735|GO:0005840|GO:0006412
Psa7g5239 137 SMART rl11c 13 116 IPR000911 GO:0003735|GO:0005840|GO:0006412
Psa7g5239 137 CDD Ribosomal_L11 13 115 IPR000911 GO:0003735|GO:0005840|GO:0006412
Psa7g5239 137 Pfam Ribosomal protein L11, RNA binding domain 61 115 IPR020783 GO:0003735|GO:0005840|GO:0006412
Psa7g5239 137 Gene3D - 50 135 IPR036769 -
Psa7g5239 137 ProSitePatterns Ribosomal protein L11 signature. 102 117 IPR020785 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5239 Psa-Chr7 458614010 458614505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5239 1 137 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 73.494 4.65e-83 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5239 K02870 - twl:119984749 255.758