Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5200 ATGACTATAATCCCCGGAGATACATACACAGAGTTTGAGAAGCATTTGCTAAATCTTCCCGAGCGGTTTTCTCATGATACACTTTCAGAGAATGACATCCAGATCTTTCATACACCTGAAGGGATGCTTTCCGCAGAGCAAGGCATTTATGTTGCTGAATCTGTTGCTTTTAAGAACACAAAACAAGCAAAGGGCCGTTTCCGGATGTATGATGATGAAGATGGCTTGGATCATGCCCAATCTAACCATTCAACGAAGAGAGATCAACCTAGTAGAGAAGCTGCCGGTGCAGGGAAAAAGGATACTGGGAAGACAACAAAGAAGGCCGACAAAGGGAAGACTGCAAAAGAAGAGGCAAGAGACTTGGTACTTAAGGAGGAGGCCTCTGTACTTGATAGAGTCCGTGAAATACAGAAAAATCTGTCTTTGATTCTAAGAACTCTTGGAAATATGGCCATTGCTAACTCAATTTTTGCACATAGTAGACTGCCTTCCATGGTCAAATTTGTTGAACCTTTACTGCGATCACCTATTGCCTTTGACATTTCCACTGCCTTACATCTAGTTGTGACTGATGAAGTTCATCATCTGTTGGATCTTGCTCCACCAGTTGTTGAAGAGGAAGTCAACAAAAGGCCACCCCTTGGCCTTTTTGAGCGAATTATAGATGGCTTATCCACTTCGTGTAAATCAGGAGCACTTCTAGTCGATTCTTTTTCTTTTGTATTCCCTATAATGGAGAGAATTCTTCTGTGCTCAAAGAAAACAAAGTTTCACGAAGCAGTGCTTCGGTTAATTTACTTACACATGGATGCTCATTTACCTCTTCCTAGGGTTCGAATGTTGTCGGTTCTTTACCATGTCCTTGGCGTTGTTCCAGCTTTTCAAGCATCAATAGGACCTTTTCTAAATGAGCTGAGTCTTGGTTTCCAGCCTGATGAAGTTGCTTCTGCACTTTATGGGAATACTGAGGTTGCAACAAGTATATGGATAGCATTACATGATCCTGAGAAGTCTGTCGCTGAAGTGGCAGAAGACATATGGGATCATTATGGGTTTGACTTTGGAACAGACTTTTCGGGAATTTACAAAGCACTTTCTCATGTTAACTACAATGTTCGCCTGGCCACTGCTGAAGCTCTAGCTGCTGCCTTGGATGAGCATCCAGATTTTATACAAGAGACACTTTCCACTTTATTTTCACTATATATTCGTGACACGGGAACTAAAGATGGAAGCTTAGAAATTATTGACATTGGAAGTGGTACTCGTGTTGAAGTTATTGAAGCTCATGGCGGCTCTGTGCGGACAATTGCTGCCCTGCCAGATAGACTTGGCTTTGTCACAGGAAGTGCAGATCACGAAGTAAAATTTTGGGACTACCAAATTAAGCAAAAACCTGTTCAAGTTACTAAGCACCTCACCGTGTCAAATGTCAAGACTATGAGAATGAATGATGATGTTCTTGTGGTTGCAATTAGTCCTGATGCCAAATATATTGCTGTTGCTCTATTGGATAGTACTGTAAGGATTCACTTTGTAGACACATTTAAATTCTTCCTTTCATTGTATGGCCACAAGCTTCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGCTCTGCTGATAAAAATATAAAGATTTGGGGTTTGGATTTCGGTGACTGTCATAAATCCTTTTTTGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTCCCCAAGACGCATTATGTGTTTAGTGTTGGAAAAGATTGTGTTGTAAAATATTGGCATGCTGATAAATTTGAGCAGCTGTTAACTCTTGAAGGACATCATGCAGAGATTTGGTGTCTTGCTGTCAGTAGTCGTGGTGATTTTATTGTCACTAGATCTCATGACCGTTCAATCCGCCATTGGGATCGTACTGAAGAGAAGTTTTTCATTGAGGAAGAAAAGGAGAAGAGGTATCGCAAGGCTGTTCCGGATGAGGTTCGGTTTAATGTTTGTGATGATTGTACAGAACTTCACTACAGAGGCACATTTGGACATGTCTATATTGGCTTCAATAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACTATGTTTTTGGATGATGCCAAGTCTATGGAAAGTCCTAAGCAATTAATGCAGGAAATTCATTTGTTGAGCCGTTTAAGACATCCAAATATTGTGCAGCATTATGGTTCTGAAAAAGTAGATGACAAGCTTTACATATACCTTGAGTATGTATCTGGAGGCTCCATACATAAACTTCTTCAAGAATATGGGCAGTTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTTTCAGGGCTTGCTTATTTACATGCTAAAAATACTCTTCATAGGGACATCAAAGGAGCAAACATACTGGTAGATCCAAATGGTCGGGTCAAGGTTGCAGACTTTGGCATGGCAAAACATATAACAGGCCTTGGTGTGGATATATGGAGTCTTAGATGCACAGTTTTGGAAATGGCTACAACTAAGCCTCCTTGGTCTCAATATGAAGGGGTTGCCGCCATGTTCAAAATTGGTAACAGCAAGGAGCTCCCAACAATCCTGGAACATCTTCCAAATGAAGGAAAAGATTTTGTTAGGAAATGTCTACAACGTAATCCACGTGATCGTCCTTCGGCAAGTGAATTATTGGACCACCCTTTTGTAAAAGGTGCTGCACCTTTGGAAAGACCTATTATGGTTCCTGAAGCTTCAGACCCTATTTCTGGAATTACACACGGGACAAAAGCTCTGGGCGTTGGACTAGGAAGAAATCTGTCTGCTTTGGATACAGATAAACTCTTAATTCATTCTTCTAGGGTTTTGAAAAGTAACCCTAATGAAAGTGAAAACCACATTCAAAGGAATATATCTTGCCCAATTTCTCCCATTGGAAGCTCACTTTTGAGGTCAAGATCACCACATCAGAGAAGTGGTATATTGTCTCCTCCTATATCTAGCCCTCGGACTGCTTCTGGTGCATCCACACCTCTCGCTGGCGGCGGAAGTGGTGCCATTCCATTCAGTAATCACTTGAAACAGTCAGTTTACTTTCAAGAGTGTCTTGGAAGCATGCCGAAATCCTCAAACTACACACACACCAACTCAAAACCATTCATAACCATACGAACTCCTCCTAATGAATACCATGAACCTTTACGCCCACAAACTCAGCATGTCCTCCTGCAGCATCAAACATAA 3231 0.4123 MTIIPGDTYTEFEKHLLNLPERFSHDTLSENDIQIFHTPEGMLSAEQGIYVAESVAFKNTKQAKGRFRMYDDEDGLDHAQSNHSTKRDQPSREAAGAGKKDTGKTTKKADKGKTAKEEARDLVLKEEASVLDRVREIQKNLSLILRTLGNMAIANSIFAHSRLPSMVKFVEPLLRSPIAFDISTALHLVVTDEVHHLLDLAPPVVEEEVNKRPPLGLFERIIDGLSTSCKSGALLVDSFSFVFPIMERILLCSKKTKFHEAVLRLIYLHMDAHLPLPRVRMLSVLYHVLGVVPAFQASIGPFLNELSLGFQPDEVASALYGNTEVATSIWIALHDPEKSVAEVAEDIWDHYGFDFGTDFSGIYKALSHVNYNVRLATAEALAAALDEHPDFIQETLSTLFSLYIRDTGTKDGSLEIIDIGSGTRVEVIEAHGGSVRTIAALPDRLGFVTGSADHEVKFWDYQIKQKPVQVTKHLTVSNVKTMRMNDDVLVVAISPDAKYIAVALLDSTVRIHFVDTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSFFAHADSVMAVQFVPKTHYVFSVGKDCVVKYWHADKFEQLLTLEGHHAEIWCLAVSSRGDFIVTRSHDRSIRHWDRTEEKFFIEEEKEKRYRKAVPDEVRFNVCDDCTELHYRGTFGHVYIGFNSESGEMCAMKEVTMFLDDAKSMESPKQLMQEIHLLSRLRHPNIVQHYGSEKVDDKLYIYLEYVSGGSIHKLLQEYGQFGELAIRSYTQQIFSGLAYLHAKNTLHRDIKGANILVDPNGRVKVADFGMAKHITGLGVDIWSLRCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTILEHLPNEGKDFVRKCLQRNPRDRPSASELLDHPFVKGAAPLERPIMVPEASDPISGITHGTKALGVGLGRNLSALDTDKLLIHSSRVLKSNPNESENHIQRNISCPISPIGSSLLRSRSPHQRSGILSPPISSPRTASGASTPLAGGGSGAIPFSNHLKQSVYFQECLGSMPKSSNYTHTNSKPFITIRTPPNEYHEPLRPQTQHVLLQHQT* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5200 1076 CDD WD40 388 639 - -
Psa7g5200 1076 ProSiteProfiles Protein kinase domain profile. 669 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g5200 1076 Gene3D - 404 592 IPR015943 GO:0005515
Psa7g5200 1076 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 639 - -
Psa7g5200 1076 Pfam Protein kinase domain 677 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g5200 1076 Pfam Protein kinase domain 823 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g5200 1076 SUPERFAMILY WD40 repeat-like 407 641 IPR036322 GO:0005515
Psa7g5200 1076 ProSiteProfiles Trp-Asp (WD) repeats profile. 565 606 IPR001680 GO:0005515
Psa7g5200 1076 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 822 1033 - -
Psa7g5200 1076 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 677 821 - -
Psa7g5200 1076 SUPERFAMILY Protein kinase-like (PK-like) 677 916 IPR011009 -
Psa7g5200 1076 Gene3D - 597 670 IPR015943 GO:0005515
Psa7g5200 1076 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 523 557 - -
Psa7g5200 1076 SMART serkin_6 677 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g5200 1076 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 822 1033 - -
Psa7g5200 1076 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 677 821 - -
Psa7g5200 1076 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 428 460 - -
Psa7g5200 1076 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 639 IPR001680 GO:0005515
Psa7g5200 1076 MobiDBLite consensus disorder prediction 78 118 - -
Psa7g5200 1076 Pfam WD domain, G-beta repeat 427 460 IPR001680 GO:0005515
Psa7g5200 1076 Pfam WD domain, G-beta repeat 602 639 IPR001680 GO:0005515
Psa7g5200 1076 Pfam WD domain, G-beta repeat 521 554 IPR001680 GO:0005515
Psa7g5200 1076 SMART WD40_4 516 555 IPR001680 GO:0005515
Psa7g5200 1076 SMART WD40_4 600 639 IPR001680 GO:0005515
Psa7g5200 1076 SMART WD40_4 421 460 IPR001680 GO:0005515
Psa7g5200 1076 SMART WD40_4 475 513 IPR001680 GO:0005515
Psa7g5200 1076 SMART WD40_4 558 597 IPR001680 GO:0005515
Psa7g5200 1076 MobiDBLite consensus disorder prediction 979 1007 - -
Psa7g5200 1076 ProSiteProfiles Trp-Asp (WD) repeats profile. 523 564 IPR001680 GO:0005515
Psa7g5200 1076 Gene3D Transferase(Phosphotransferase) domain 1 671 916 - -
Psa7g5200 1076 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 460 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5200 Psa-Chr7 456427973 456432002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5200 678 1028 MAP Kinase Kinase Kinase AT1G63700 63.228 4.74e-147 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa7g5200 Pkinase 9.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5200 - K20717 gmx:100811808 634.795