Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5169 ATGCAGGAACTTTCTGATATTGACAGAAGAAATATTGTTAATTCGAGCTTAAAAGAACGACGAGGACTACTTCCAAAGACTGCTGGAGCTAAATATGGCAAAACTATTCCAATCCAAAACTTCTCTTTCAAGGGAACAAATTTGCTCCAATGCCAAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTTATTCCTCAGTTGAGAACTCCAACTTTGAGTTACCATTGATCCCGGCAAAGCGTCCTCGCAGTAAACGCCGGCGTCTCTCAAGCTTCAACAAGCTTTTCTTAATTCAATTCATACCTCCTTTTCAAAAACATCAATCCAAAACACAGCGTGCTGGTAAGCAAAAAAGAAAGGATATCTCGCAGCGGAGAGTCCAAAGAAAGCCAACGAAAAAGGATAATACCTCACAGCGCGCCGATGATATCAAGATGAAGAGATCCTCATTACAGGAATCAGTTACCCCCAGAAAATGTACTCATTGCGAGGTGACAGAGACTCCGCAATGGAGAGAGGGGCCTAAAGGTCCGAAGACCCTATGCAACGCGTGTGGAGTTCGATACCGGTCGGGCCGCCTCTTTCCTGAATACAGGCCTGCAGCTAGCCCAACCTTTGAAGCATCATTGCACTCAAATTCTCACAAGAAGGTTATAGAAATCAGGAACAAGGTGAACAACGAGACTGATAAAGGTTCTTCTATTTTGTATTTATCATCAAACTTTTGA 732 0.4303 MQELSDIDRRNIVNSSLKERRGLLPKTAGAKYGKTIPIQNFSFKGTNLLQCQTYSPVSVFESSSYSSVENSNFELPLIPAKRPRSKRRRLSSFNKLFLIQFIPPFQKHQSKTQRAGKQKRKDISQRRVQRKPTKKDNTSQRADDIKMKRSSLQESVTPRKCTHCEVTETPQWREGPKGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHKKVIEIRNKVNNETDKGSSILYLSSNF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5169 243 ProSitePatterns GATA-type zinc finger domain. 161 186 IPR000679 GO:0006355|GO:0043565
Psa7g5169 243 Pfam GATA zinc finger 161 194 IPR000679 GO:0006355|GO:0043565
Psa7g5169 243 SMART GATA_3 155 205 IPR000679 GO:0006355|GO:0043565
Psa7g5169 243 Gene3D - 151 229 IPR013088 GO:0006355|GO:0008270
Psa7g5169 243 ProSiteProfiles GATA-type zinc finger domain profile. 155 191 IPR000679 GO:0006355|GO:0043565
Psa7g5169 243 MobiDBLite consensus disorder prediction 112 128 - -
Psa7g5169 243 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 49 226 - -
Psa7g5169 243 CDD ZnF_GATA 160 207 IPR000679 GO:0006355|GO:0043565
Psa7g5169 243 PANTHER GATA TRANSCRIPTION FACTOR 49 226 - -
Psa7g5169 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 218 - -
Psa7g5169 243 MobiDBLite consensus disorder prediction 107 154 - -
Psa7g5169 243 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5169 Psa-Chr7 452414355 452417258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5169 52 231 C2C2-Gata Transcription Factor Family AT1G08010 44.751 8.24e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa7g5169 GATA 3.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5169 - - mtr:MTR_4g058910 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5169 7 452414355 452417258 Psa7g5169 7 452414355 452417258 ECH
Psa5g6431 5 545554291 545560376 Psa7g5169 7 452414355 452417258 ECH
Psa5g6431 5 545554291 545560376 Psa7g5169 7 452414355 452417258 PCT