Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5168 ATGAGTGTAGATCATGGTGATGGTGTTTATGCTAGTTTCAGGTGGGAAAATCAATCATGGAGTGATCTCTTAAATTTTGAAAATTTAGGTGAGAATAGCGAACAAAAGTTAAATATGAAATCATTGAACCATAAAGAAGGACTTAATGAAGGAGAAGTTCATGTGAATAAAAAACAAAATCGAGTTGGGGTTGTGATTAGAAGTGAGAATGATATAAAGGGTGGAGGTAAAGATGAAATATATCGTGATTTAGATCATGAAATGCATATCTTGGCCGAGAGAGAAAGGAGAAAGAAAATGAGAAATATGTTCTCTAGCCTTCATGCTTTGCTTCCTGAACTACCTTCAAAGGCTGATAATTCAACAGTTGTGGATGCAGCGGTGAAGAAAATTAAAAATCTAAAGAAAATTATTGAAATGTTAGAAAAGAAGAAGAAAGAAAAACTTAAATATGTATCCTTATTAGGAAGTGAGTCATCATCTGTGATCAAAAAACCACAATGGCATCCCTATGAATCAAGGGAAGCAATCATAGTTGATCATGGATCCTCAAGTTATAATAATAACTTTCCTACTAGTGCAATTGCTACTTCATATCATAATTCAAAAGCATTAGTACAATCTACTCCTCCACCACAACAAGTAGCTTTTCGAACATGGTCTTATCAAAATGTTGTCTTAAACATTTATGATGGTGAAGCACAATTCTGCATATGTGCTACTAAAATGTTAGGTCTTTTGACAATGATTGCTTTTGTGCTGGAAAAATATAGGATTGATATTGTAGTTGCCAACATTACATGCAATGGAAATGGAAACTTCTACATGATTCTAGCTCATGCTAGACAATGTTTACAGGATTCAATTTCAGTGGAGGAAACTTACAAGCAAGCAGCTAAAGAAATTATGATGTTGATCTCTTAA 924 0.3355 MSVDHGDGVYASFRWENQSWSDLLNFENLGENSEQKLNMKSLNHKEGLNEGEVHVNKKQNRVGVVIRSENDIKGGGKDEIYRDLDHEMHILAERERRKKMRNMFSSLHALLPELPSKADNSTVVDAAVKKIKNLKKIIEMLEKKKKEKLKYVSLLGSESSSVIKKPQWHPYESREAIIVDHGSSSYNNNFPTSAIATSYHNSKALVQSTPPPQQVAFRTWSYQNVVLNIYDGEAQFCICATKMLGLLTMIAFVLEKYRIDIVVANITCNGNGNFYMILAHARQCLQDSISVEETYKQAAKEIMMLIS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5168 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 134 IPR011598 GO:0046983
Psa7g5168 307 PANTHER - 13 305 IPR044278 GO:0003700|GO:0006355|GO:0009960
Psa7g5168 307 CDD bHLH_AtbHLH_like 89 128 IPR045239 -
Psa7g5168 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 152 IPR036638 GO:0046983
Psa7g5168 307 Pfam Helix-loop-helix DNA-binding domain 87 134 IPR011598 GO:0046983
Psa7g5168 307 PANTHER TRANSCRIPTION FACTOR BHLH95 13 305 - -
Psa7g5168 307 Coils Coil 124 151 - -
Psa7g5168 307 Gene3D - 81 150 IPR036638 GO:0046983
Psa7g5168 307 SMART finulus 90 140 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5168 Psa-Chr7 452205543 452207330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5168 85 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.214 8.30e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g5168 HLH 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5168 - - mtr:MTR_4g085700 345.895