Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5149 ATGATTTCTGAAGAAAATCATAAACCTGTCACTGATCATGAGGATCATGATGCTTCCTCTTGCAGAACAACAGCTTCTCTTCCTGTTGCTCACAAGGATAATGATGATTCGACGGGGATAACTGAAGAAATCACGCATGTTCCTCCCCGGAGGAAACAGAATCTTCTCTTGGAAATACCGTCAAGAACACCAGAAGAGTGTTCACAAGATTATGTTGCTATCAAGATGCCAATGACGCCGAGTCCTACTCCAACTCCGACTCCCAAGAGAGTGAATTTTCTGATGACTTCTCGGTCGGTCGATGCTCCAACAAATAATTCTCCTGGATCTGCAACATCAAAAGGTAAATCATCGTTAAGAAACATCCTACCAAAATTGAGCTTCAGGAATAGGACACTGACAGATATTGAAAAGGCGAACGCATCAACTCTGGAGGTTTCCTCTTCAGGCCCTCGAGAAAAGCCTTTGATCTCAAGATCATTGTCACTTAGTAAAATATTTACGCCTAGGATGAAAAGAACTTCATCGTTGCCATTAGAAGAGATTGGACATTCAAATACAGAATCCACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTCTGAGTAAAAGAGAAAGTCGACTTAAGATAGCACGCTCTCTTTCAATGCCGGCTAACAACAAGAAGGACAAAAGCCTAAGGAGGATGGATTCGTTTTTTCGCGTCGTTTCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGAGCACGTCTCCGACAAAGGATACTGAAATCGAAGACGCTGATGATGGCGAAGATATAGCTGAAGAAGAGGCGGTGTGTAGAATTTGTCTGATTGAATTATGCGAAGGAGGCGAGACATTCAAGTTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAATAGAACTTGTGATGTCTGCAAAGAGGATGTTAGAAACCTTCCTGTCACTCTATTACGGATTCAAAGTGTTCGAAATCGAATTACTGGAGCAAGTAGATCTCAGCTCGAAGATGTAAACGGGATTTGGCAGGAAGTTCCGGTGCTTGTCATTGTTAGCATGTTGGCATATTTTTGTTTTCTTGAGCAACTTTTGGTTACAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTAGGCCTGCTCTCCTCCATGACATCATCAACCATGGTGAAAAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTCTTGTGGTCCTCTTCGCGCACATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTATCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTAATGAGTGTAAGCTCTTTCCTTGTTGAGCTTTTTAGATGGAGAAGGAGACGGCAGGCTTCATCAGAGCAACAACATGGCCCTCTACCGATGACACAAGCGGTACAACAACCTCGGCCTTCAAACACGCCACGATCGGGTGAATCCAACCACAATCAATCTATAGTGCAAAATCAACAAGACTCAAATCAAAGTTGA 1566 0.4259 MISEENHKPVTDHEDHDASSCRTTASLPVAHKDNDDSTGITEEITHVPPRRKQNLLLEIPSRTPEECSQDYVAIKMPMTPSPTPTPTPKRVNFLMTSRSVDAPTNNSPGSATSKGKSSLRNILPKLSFRNRTLTDIEKANASTLEVSSSGPREKPLISRSLSLSKIFTPRMKRTSSLPLEEIGHSNTESTHGGNGSVGGPLSKRESRLKIARSLSMPANNKKDKSLRRMDSFFRVVSSTPRVKEGNELLSTSPTKDTEIEDADDGEDIAEEEAVCRICLIELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVRNLPVTLLRIQSVRNRITGASRSQLEDVNGIWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSVSSFLVELFRWRRRRQASSEQQHGPLPMTQAVQQPRPSNTPRSGESNHNQSIVQNQQDSNQS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5149 521 MobiDBLite consensus disorder prediction 478 521 - -
Psa7g5149 521 MobiDBLite consensus disorder prediction 1 40 - -
Psa7g5149 521 MobiDBLite consensus disorder prediction 1 20 - -
Psa7g5149 521 Pfam RING-variant domain 275 322 IPR011016 GO:0008270
Psa7g5149 521 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 6 509 - -
Psa7g5149 521 SUPERFAMILY RING/U-box 271 325 - -
Psa7g5149 521 ProSiteProfiles Zinc finger RING-CH-type profile. 267 329 IPR011016 GO:0008270
Psa7g5149 521 MobiDBLite consensus disorder prediction 479 521 - -
Psa7g5149 521 PANTHER OS02G0165000 PROTEIN 6 509 - -
Psa7g5149 521 MobiDBLite consensus disorder prediction 99 118 - -
Psa7g5149 521 SMART ringv_2 274 323 IPR011016 GO:0008270
Psa7g5149 521 MobiDBLite consensus disorder prediction 184 203 - -
Psa7g5149 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 330 IPR013083 -
Psa7g5149 521 CDD RING_CH-C4HC3_MARCH 275 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5149 Psa-Chr7 450497795 450501319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5149 231 329 C3H Transcription Factor Family AT2G37950 36.000 3.77e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5149 - - gmx:100788108 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5149 7 450497795 450501319 Psa7g5149 7 450497795 450501319 ECH
Psa5g6389 5 542127036 542130984 Psa7g5149 7 450497795 450501319 PCT