Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5142 ATGGCTTCTTCAAACAATTCCATAGCAGAAAACAACAAACCCAAAAAATCAGAAACCTCAACACCTACCAGCAAAATCAAAAAGGAAGAAGACGTAGAAAAATCCAGTGAGAAGAAGAAGAAGAACGAGGAGAACAAAGGCAACAACAAGAGTAAGAAGCTCAAGTTCGCCAATGGAAATTCCAAACAAAAAGAGGATAACGGAACGAAACACGAGAACGATGTGGAAGAAGAAGAAGGAGTAGGAGAAGAAGAAGCGAAAACGAACGTGTTTCCGATGAATCGAATCAGGACGATAATAAAAGCAGAAATCAGCGATTTGCGTGTTTCTCAGGAAGCTATATTGGCGATTAACAAAGCTGCGGAGAAGTTTCTTGAACAATTAGCTCAGGAAGCTTATGCTTGTTGTGCTCAGGATCGTAAGAAGTATCTGAGTTACAATCACCTATCAAATGTTGTTAGTAAGCAAAGAAGATTCGACTTTCTGTCTGATTTTGTTCCCGAGAAAGTGAAAGCCGAGGACGCATTAAGAGAGACAATCTCAAGAGGGGATAGAGGCGGTTAG 564 0.406 MASSNNSIAENNKPKKSETSTPTSKIKKEEDVEKSSEKKKKNEENKGNNKSKKLKFANGNSKQKEDNGTKHENDVEEEEGVGEEEAKTNVFPMNRIRTIIKAEISDLRVSQEAILAINKAAEKFLEQLAQEAYACCAQDRKKYLSYNHLSNVVSKQRRFDFLSDFVPEKVKAEDALRETISRGDRGG* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5142 187 MobiDBLite consensus disorder prediction 1 88 - -
Psa7g5142 187 MobiDBLite consensus disorder prediction 20 51 - -
Psa7g5142 187 MobiDBLite consensus disorder prediction 1 19 - -
Psa7g5142 187 Gene3D Histone, subunit A 1 168 IPR009072 GO:0046982
Psa7g5142 187 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 5 180 - -
Psa7g5142 187 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 180 - -
Psa7g5142 187 MobiDBLite consensus disorder prediction 58 76 - -
Psa7g5142 187 SUPERFAMILY Histone-fold 80 167 IPR009072 GO:0046982
Psa7g5142 187 Coils Coil 25 46 - -
Psa7g5142 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 91 153 IPR003958 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5142 69 149 CCAAT-HAP5 Transcription Factor Family AT1G07980 43.210 2.33e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Psa7g5142 CBFD_NFYB_HMF 3.8e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5142 - - lja:Lj3g3v3086110.3 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5142 7 450207012 450209370 Psa7g5142 7 450207012 450209370 ECH