Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5132 ATGATGTCCAAACAAGCCTTTTCAGTTTCACCTCATTCCAACACCATGAGAGGTTCCTCATCGAATCATCTTCAAAACCCTAATCCGAACTCAATTCCACCTAAGAAAAAAAGAAACCTACCTGGAACACCAGATCCAGATTCAGAAGTGATAGCCATGTCGCCGAAATCATTGATGGCGACGAACCGTTTCTTATGTGAAATCTGCAACAAGGGATTCCAAAGAGACCAGAATTTGCAGCTTCATCGACGCGGACACAACCTTCCGTGGAAGCTGAAGCAAAGAGCTAACAAAGATCAAATTCGGAAGAAGGTTTATGTGTGTCCTGAGAAGAGCTGTGTGCACCATGAACCTTCTAGAGCTTTAGGAGATTTGACAGGAATTAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAATGGAAGTGTGAAAAGTGTAACAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGCAAAATTTGTGGAACTAGAGAATACAAATGTGATTGCGGCACAATTTTCTCCAGGAGGGACAGCTTCATAACGCATAGAGCTTTTTGTGAAGCATTGAGTGAACAAACTGCAAAGATATCAATACCAACAGTTCCAAGAAATTTTCATAATGATCATTTCACAAATACTCAAACTCCAAGGATCTCTCAAATTTTTCCTGGCTTTCAGTTTCACTCCGAGTTTGTTGGTTCGGGAACATCGTCGTCATCACTATGGCCAGTGCTAGAGCAAACAAATTATCAACAAGTTCTTCCTAGTAGTGATGTAATGCAACAAACAATGGATGTGTTTGGATCACAAACACAATGGTTGAATCATAATAGTAATAATCTATCTTTGCCAATGCTACATGGAGTAATGAAACAAGAGGAAGAAGAAAACAAAGATTTGTCTCATAGTGTAATAAGCTCATTGTACTTGAGTAGTAGTCAGAATCCACAAGGAGGATCATCAAATCACATGTCAGCAGCAACAACGTCGCTGTTGGAGACAGAATCTCAAATGGGATCTACAAGGACAGTTATTACTAATGATGATGATAACAACAACAACAACAACAACAGCAACACACTCTTTAACAATGTGAACAACTTTAGCATTGTTGACAAATTCTACAAGCAAGGTCATCATGAAAGTGAAGACTTGAATGAGTTGGTGAATTTGGAAGGAGGTAGCAGAACCAATTTTGGAGGTGAGTATTTATTAAATGACTCATTTGGGACTGTGAACGTGAATGGTACCAAGAATTTAGACCATGTGGCGATGTTGGTGAATAGAGAGACAAGAATAACAAATCGATATTTACGTGATTCGAGTTTAATGTCAAAAGACAAAAACCAAATGGGATTTACAAGAGATTTTCTTGGGGTTGGAGATGATGATGAGTCAATGAGTAGATCAACTTTTTTGCAGCAAGAGCTTGATGGATTTCATGGAATGGGATCATTAGGGAATAATCTGCAGAGCCAGTTTCGTGGTGGTGGAGACTATTGCTAG 1515 0.3881 MMSKQAFSVSPHSNTMRGSSSNHLQNPNPNSIPPKKKRNLPGTPDPDSEVIAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKSCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCNKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCEALSEQTAKISIPTVPRNFHNDHFTNTQTPRISQIFPGFQFHSEFVGSGTSSSSLWPVLEQTNYQQVLPSSDVMQQTMDVFGSQTQWLNHNSNNLSLPMLHGVMKQEEEENKDLSHSVISSLYLSSSQNPQGGSSNHMSAATTSLLETESQMGSTRTVITNDDDNNNNNNNSNTLFNNVNNFSIVDKFYKQGHHESEDLNELVNLEGGSRTNFGGEYLLNDSFGTVNVNGTKNLDHVAMLVNRETRITNRYLRDSSLMSKDKNQMGFTRDFLGVGDDDESMSRSTFLQQELDGFHGMGSLGNNLQSQFRGGGDYC* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5132 504 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Psa7g5132 504 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Psa7g5132 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Psa7g5132 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 471 - -
Psa7g5132 504 MobiDBLite consensus disorder prediction 1 33 - -
Psa7g5132 504 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 7 471 - -
Psa7g5132 504 Gene3D Classic Zinc Finger 118 199 - -
Psa7g5132 504 SMART c2h2final6 141 161 IPR013087 -
Psa7g5132 504 SMART c2h2final6 106 136 IPR013087 -
Psa7g5132 504 SMART c2h2final6 64 86 IPR013087 -
Psa7g5132 504 Gene3D Classic Zinc Finger 43 117 - -
Psa7g5132 504 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5132 Psa-Chr7 449531812 449534404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5132 35 342 IDZ Gene Family AT3G45260 53.982 2.54e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g5132 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5132 K25870 - gmx:100781896 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5132 7 449531812 449534404 Psa7g5132 7 449531812 449534404 ECH
Psa5g6377 5 541698001 541701083 Psa7g5132 7 449531812 449534404 PCT