Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5125 ATGGAAGAGTTTGTTATGGAAGAAAAACTGATTGGTTATTCTAACAAAGATGCAACTCATGTTGTCAAAGGAAAACGCACAAAGAGGTTAAGACTTTTATCTCCTTGCGGTGTTGTTTCTACTCCATCGAGTTGTTCGAGTGGTGAGAGCAATACTGATGGTGAGGATGATGAAGAAGACATGGCTAATTGTTTGATTCTCCTTGCTCAAGGAGGAAATCACAAGCAACATGGTGGTGGTGATGGTAATGATGGTGATGATGACAAAAGGGAAAAGGGTAGTAATGGAAATAAAAAAATTGGTGAGATTGTAACTGCTACTTTAAGTAACACAAAAGCTGGTTTGTATATTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCCTTGGGTGGTCACAGGGCAAGTCACAAAAAGCCTAAACTTATGGCTGAGATGAAAAAACCACCGCTATCGCCGCTGTCACAACCGCAAACTTCATCACAAGATTCGCGATCAGTTAAATTACTGATTGCGAACTGTGATGAGTTTGAAGTAGTAGCTGAGAAGCCTCGTGGGCCAACTATTTCTTTTCAAATGGGGAATCAAAGTTTGAAAGTTATTAATGGAAACAAAGCAAAGATTCATGAGTGTTCCATTTGTGGATCAGAATTCACATCTGGACAAGCATTGGGTGGACATATGAGAAGACATAGGACATCTCCGGCGAACGCTGCTGCTGTCGCGGTGGTTGACGGAGGAGTTCGGCCACGGAGTATTTTACAATTGGATCTTAACCTTCCGGCACCGGAAGAGGATATCCGGGAAGCAAAGTTTCAGTTTCCGACACAAAAATCTATGGTGATGTCTGCTGCTCCGGCTTTGGTGGATTGTCATTATTAG 891 0.4164 MEEFVMEEKLIGYSNKDATHVVKGKRTKRLRLLSPCGVVSTPSSCSSGESNTDGEDDEEDMANCLILLAQGGNHKQHGGGDGNDGDDDKREKGSNGNKKIGEIVTATLSNTKAGLYIYECKTCNRTFPSFQALGGHRASHKKPKLMAEMKKPPLSPLSQPQTSSQDSRSVKLLIANCDEFEVVAEKPRGPTISFQMGNQSLKVINGNKAKIHECSICGSEFTSGQALGGHMRRHRTSPANAAAVAVVDGGVRPRSILQLDLNLPAPEEDIREAKFQFPTQKSMVMSAAPALVDCHY* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5125 296 SUPERFAMILY beta-beta-alpha zinc fingers 117 234 IPR036236 -
Psa7g5125 296 Gene3D Classic Zinc Finger 116 234 - -
Psa7g5125 296 MobiDBLite consensus disorder prediction 79 97 - -
Psa7g5125 296 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Psa7g5125 296 SMART c2h2final6 212 234 IPR013087 -
Psa7g5125 296 SMART c2h2final6 118 140 IPR013087 -
Psa7g5125 296 Pfam C2H2-type zinc finger 212 236 - -
Psa7g5125 296 Pfam C2H2-type zinc finger 118 143 - -
Psa7g5125 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
Psa7g5125 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Psa7g5125 296 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 296 - -
Psa7g5125 296 MobiDBLite consensus disorder prediction 71 98 - -
Psa7g5125 296 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Psa7g5125 296 PANTHER ZINC FINGER PROTEIN ZAT5 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5125 Psa-Chr7 449021900 449023670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5125 17 296 C2H2 Transcription Factor Family AT2G28200 40.125 9.64e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g5125 zf-C2H2_6 4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5125 - - aprc:113858527 281.567