Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5117 ATGGATTTGGTAACAACTGTCAAGGACAAATTAACATATTTCCGTATAAAAGAGCTCAAAGATGTGCTGACACAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGACCTCGTTGATCGGATATTATCCATTCTCTCAGATGAGCAAGTTTCCAAAATGTGGGCTAAGAAGAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTGGACGACACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCATCAAAGGGTCAGGTTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGATGATTCCCTTCAAATTCAGTCAGCTGCAACTATAACTACAACTACAACTACAAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGAAGATTTGATCAAGTGCGATGATGCAAGATGCCAAGTGTGGCAACACATCAGCTGCGTTATTATTCCAGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTATGTCGACTTAGTCGTGCAGACCCGTTTTGGGTTTCAGTATCTCATCCTTTGTTACCGGTAAAGTTGACCACAACCAGTATTCCAACGGATGGTTCCAACCCAGTGCAGTGCGTGGAGAGAACATTTCAATTCACAAGAGCAGACAAAGACATGGTATCAAAACAAGAGTTCGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTAGCGGTCAATGGCCTTCCTGTTCGAACAACTAACAGACCCGGTTCACAATTGCTCGGGGCTAATGGTCGGGATGATGGTCCAATTATCACGGCGCATACAAAAGATGGAATTAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTTTGTTTAGGTGTTCGCATTGTAAGAAGGCGCAATTTGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCATTTTGAAGATGCTCTTGCACGCGTTTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATTAACCTTCGCTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGAAGTCTTTGTGGAGATGAATCAACGTTCAAGAAAATGGCAATGCCCTATATGTCTCAAAAACTATGCCTTGGAGAATATCATCATTGATCCTTATTTCAATCGCATCACTTCTCTGATGATTAATTGCGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTTAAGACAAAGAGTGAAAGTGAACGTCTGGAGTTAGGGAATCTTGGCCGATGGCACTTTCCTAATGGATCCCTCTGTGCTTCTACTGATGGAGATATCAAAAGAGTAGAAACATTGAAGCAAGTAAAACAGGAAGGTTTTTCAGACGGACCTGCTGGTTTAAAACTTGGCATTAGGAAGAATCGCAATGGAATTTGGGAAGTCAGTAAGCCTGAGGGCACAAACACCTCTTCTGGTCATAGATTAAAGGAGGTTTTTGGAAATCCTGAACATGTTGTTATTCCAATGAGTAGCAGTGGCACCGGAAGTGGCCGTGATGGTGATGATCCCAGTGTTAACCAGGGCGGCGGTGGGCATATTGATTATTCTACTACCAATGGAATTGAGATGGATTCCGTGTCTCTCAATAATGTTGATTTAGCTGGTGGATATACTGCACATAACACATCAGCTCAGATGGGTGGTGCAGAAGTAATTATTCTTAGCGATTCCGAAGAGGACGATATATTGGTGCCTCCTCCTGCAATTGCAACTAACAACAACATAATTGATACTGCGGATGGTTACTCCATGCCACCACCTGGAATTGTTGACCCATATGCTGAAGATCAGAATCTCGGTGGAAATTCATGCTTGGGCCTTTTTCCTAATGAAGATGATTTTGGGATGTCTTCCTTGTGGTCATTGCCATCTGCAACTCAGACTGGTCCAGGATTCCAATTATTTGGTTCTGATGCAGATGTCTCTGATGCATTGGTCCATTTGCAGCATGGTCCTATTAATTGCACCTCATCACTGAATGGTTATACATTGGCTCCCGAAACTGCTTTGGGATCTAGTAGCCTATTACAAGATTCTTCTGCTGGTCGGTCAGATGCTGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGACGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGGCGAGTCATCCGTGCAGAATGAGTTGAGAGATCAAACAAATGTCTCCAATGGTGTCTGTACTGAAGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGCCGGCAGTAATGGCGACGCTTCCACTCAAAATGGATTGAATTCTAGACATCAAGTCCCAGCCAGAGACAGCAGCACTAATACTTTAGCTGATACTGCTTCTTTGCTTCTTGGTATTAATGACGTAAGATCTGACAAAGCAAGTAGACAAAGGTCGGGTAGCCCTTTCACATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCCTATACCTTTCTATTGATGATTCAGATTCGGAATAA 2670 0.433 MDLVTTVKDKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQVVSDSSNVKVKAEVDDSLQIQSAATITTTTTTKIRCLCGSTLETEDLIKCDDARCQVWQHISCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSVSHPLLPVKLTTTSIPTDGSNPVQCVERTFQFTRADKDMVSKQEFDVEAWCMLLNDKVPFRMQWPQYTDLAVNGLPVRTTNRPGSQLLGANGRDDGPIITAHTKDGINKISLTVCDARIFCLGVRIVRRRNLQQILNLIPKESDGEHFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSLMINCGEDVTEVEVKPDGSWRVKTKSESERLELGNLGRWHFPNGSLCASTDGDIKRVETLKQVKQEGFSDGPAGLKLGIRKNRNGIWEVSKPEGTNTSSGHRLKEVFGNPEHVVIPMSSSGTGSGRDGDDPSVNQGGGGHIDYSTTNGIEMDSVSLNNVDLAGGYTAHNTSAQMGGAEVIILSDSEEDDILVPPPAIATNNNIIDTADGYSMPPPGIVDPYAEDQNLGGNSCLGLFPNEDDFGMSSLWSLPSATQTGPGFQLFGSDADVSDALVHLQHGPINCTSSLNGYTLAPETALGSSSLLQDSSAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPGESSVQNELRDQTNVSNGVCTEDWISLSLGGGAAGSNGDASTQNGLNSRHQVPARDSSTNTLADTASLLLGINDVRSDKASRQRSGSPFTFPRQKRSVRPRLYLSIDDSDSE* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5117 889 SMART PHD_3 124 176 IPR001965 -
Psa7g5117 889 Pfam SAP domain 14 42 IPR003034 -
Psa7g5117 889 Pfam MIZ/SP-RING zinc finger 369 417 IPR004181 GO:0008270
Psa7g5117 889 Gene3D SAP domain 1 62 IPR036361 -
Psa7g5117 889 SUPERFAMILY FYVE/PHD zinc finger 118 179 IPR011011 -
Psa7g5117 889 SMART sap_9 11 45 IPR003034 -
Psa7g5117 889 CDD PHD_Bye1p_SIZ1_like 124 175 - -
Psa7g5117 889 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Psa7g5117 889 ProSiteProfiles Zinc finger SP-RING-type profile. 356 439 IPR004181 GO:0008270
Psa7g5117 889 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 821 - -
Psa7g5117 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 457 IPR013083 -
Psa7g5117 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 181 IPR013083 -
Psa7g5117 889 Pfam PHD-finger 124 176 IPR019787 -
Psa7g5117 889 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 821 - -
Psa7g5117 889 ProSitePatterns Zinc finger PHD-type signature. 125 175 IPR019786 -
Psa7g5117 889 SUPERFAMILY SAP domain 1 64 IPR036361 -
Psa7g5117 889 MobiDBLite consensus disorder prediction 812 837 - -
Psa7g5117 889 CDD SP-RING_Siz_plant 370 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5117 Psa-Chr7 448842555 448853598 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa7g5117 PHD 3.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5117 - - aprc:113857557 1503.42