Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5113 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGAGAAGAATGATGCATTATGCATTAAGGATTGTGAAAAAGGTTGCACTTCATGTGTTTGTTGTTTGTCCCCTTCCACTTGTTCATCTTCTAGTTCCACTTCACCACTTGCTTCTTCTTCTTATCTTGAGCTTTGGCATGCTTGTGCTGGACCTCTAATTTCTCTTCCTAAGAAAGGAAATGTTGTGGTTTATCTTCCACAAGGTCACTTAGAACAATTTGCTTCTTTCTCTCCTTTTAAACAATTGGAGATACCGACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATATACAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAGGCTGAGTTGGCAGGTATGCATATGGAGGGAAACGAAGTTGAGGAATTAGAAGGAGATGAAGAGGGAGATGGAGGGTCACCTACAAAATCTACTCCTCACATGTTCTGCAAGACACTAACAGTTTCTGATACCAGCACTCATGGTGGCTTCTCTGTGCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCTAAAGACTTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCGAGGCGGCATCTACTCACTACTGGCTGGAGCATTTTCGTGAACCAAAAGAATCTTGTTTCTGGTGATGCTGTGCTCTTTCTAAGGGGTGAAAATGGAGAGTTGAGATTGGGAATCAGAAGAGCTGTTAGGCCTAGAAATGGTCTTCCTGAATCAGTTATTGGTAACAAGAACTGTTATCCTAATTTCCTTTCTTCTGTGGCAAATGCTATTTCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCCGAATTTGTGGTTCCCTTCCAAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATAGGGACAAGATTCAAAATGAGATTTGAAATGGACGAATCGCCCGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAATGAATGATGTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTGATGGTCCGATGGGATGAGGATATGGAGACTAATCATCAAGACCGAATATCTCCATGGGAGATTGATCCTTCGACTCCTCTGCCTCCTCTAAGCATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGACCAGTCTGCAGGTTGCCTCGCCCAGTCACCTTACCACTGAAAGAAGCAGTGGAATGATGGGCTTTGAGGAGTCGGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTATGTCGCTATACTACGGATGTGACAAAGGAACCAACCAGCCAGGTTTTGATTTGAGCTCTTCAAGTCATTATCAAAATCTTGCATCAACTGGAATAGGAAAAGTAGTTACCTCTTCTGAGCTTATGAGTGTTCACCCTTTCGGTTACGCAGGCTTTATGGAAAGTAACAACTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCCCTAACAGGAAAAGTCGATTTCAACGTCGGTGCTTGGGGAAAATCCATTGCAAGTTGCACAAATTTCAGCCTTCATCAAGGAACCAAACACAACTTTCAATCTGCATATTTTCCTTATGGAGATATTCAAAAAGCTGATCAAGCTAACATCTTTAGCTCAAAACATAATGTGGGGTTTAACGCGCCGTCGACAATTGCAGGGAACATTAGAAATGATGTCAGAAGATCTGAATCTAATCTCCCAATTGAGCATAAGCTGCAGGACAATATTTCTGTTTCTGCTTCATTAGGGACTGCTGATATAAAGGTTCCGAATGATAACAATGTCACCGGAAAGGTAAACTCCTGCAAAATATTCGGGTTTCCTTTGTCTGCGGAAACTAGTACTCAAAATTTACAGAACACTGCAAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGAAGTTTAGTTGGAAGAGCCGTTGATCTCTCGAGGTTGAGCGGCTACATTGATCTTCTGAGTGAACTAGAGAAACTATTTGGAATGGATGGCCTTCTTAGAGACTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTATCCAAGATCCATATATATACCAAAGAAGAAGTGGAGAAGATGACATTTGGGATGAACAATGATGATACTCATAGCTGTTTGGAACAGGCACCAGTGCTTATTGAACCTTCTAAGTCTTCCTCAGTTGGTCAGCCAGATTATTCTCCAACAGTAGTTAGAGTTTAA 2388 0.4188 MEIDLNHEVTEIEKNDALCIKDCEKGCTSCVCCLSPSTCSSSSSTSPLASSSYLELWHACAGPLISLPKKGNVVVYLPQGHLEQFASFSPFKQLEIPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMHMEGNEVEELEGDEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESVIGNKNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPFQKYVKSIKNPVTIGTRFKMRFEMDESPERRCSSGMLIGMNDVDPYRWPKSKWRCLMVRWDEDMETNHQDRISPWEIDPSTPLPPLSIQSSPRLKKPRTSLQVASPSHLTTERSSGMMGFEESVRSPKVLQGQENSGFMSLYYGCDKGTNQPGFDLSSSSHYQNLASTGIGKVVTSSELMSVHPFGYAGFMESNNFPRVLQGQEICKLKSLTGKVDFNVGAWGKSIASCTNFSLHQGTKHNFQSAYFPYGDIQKADQANIFSSKHNVGFNAPSTIAGNIRNDVRRSESNLPIEHKLQDNISVSASLGTADIKVPNDNNVTGKVNSCKIFGFPLSAETSTQNLQNTAKRSCTKVHKQGSLVGRAVDLSRLSGYIDLLSELEKLFGMDGLLRDSDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMNNDDTHSCLEQAPVLIEPSKSSSVGQPDYSPTVVRV* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5113 795 Pfam Auxin response factor 293 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa7g5113 795 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Psa7g5113 795 PANTHER AUXIN RESPONSE FACTOR 26 783 - -
Psa7g5113 795 SUPERFAMILY DNA-binding pseudobarrel domain 159 278 IPR015300 -
Psa7g5113 795 Gene3D - 165 269 IPR015300 -
Psa7g5113 795 Gene3D - 331 402 - -
Psa7g5113 795 Gene3D - 663 756 - -
Psa7g5113 795 ProSiteProfiles PB1 domain profile. 667 749 IPR000270 GO:0005515
Psa7g5113 795 MobiDBLite consensus disorder prediction 408 439 - -
Psa7g5113 795 CDD B3_DNA 165 267 IPR003340 GO:0003677
Psa7g5113 795 MobiDBLite consensus disorder prediction 408 436 - -
Psa7g5113 795 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
Psa7g5113 795 SUPERFAMILY CAD & PB1 domains 670 746 - -
Psa7g5113 795 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 783 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa7g5113 795 SMART B3_2 167 269 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5113 Psa-Chr7 448753639 448759301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5113 49 795 B3 DNA Binding Superfamily AT5G60450 59.416 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa7g5113 AUX_IAA 7.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5113 - - gmx:100783513 1244.18