Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5110 ATGTATAAAACATACTCGCTATGGCTGTTTACGGAACAGTCACATTCCATGGACTCAACGGAAGACCTGCACTTCTTATTAACAGCGCAACGCCGGGAACTCACGGCGGCGGAATCCATGGAATCCGATCTCGATTTCGCTTTCCATCTCCAGTTACAGGAAGCCCTTGCCGCTTCCCTCACCGATCATCCCTCATCCTCCATGGGTGCTATACTCGTAGAACTCCCCTTGGACGACGACGACGTTTCCAAAGCACCGTCTCTCCAGTTGGAAGAGCTCGCAAGGATGGAGATCGAGATGAACGACAGAGAACAGAGCGAGAGAATAATGCGCGAGGCGAAGGTTGATATCAACCGTCGGATTCACGATCAGAAAATGGCGTCGGAGATTCTCAATTTTCCTGGAGAAGATTGGGATGAATGGGGCGATAATTTCGAGAAACCGTTCGGTGAGGGGAGTTCGAGTTCGTCTGGGTTGAAGAGTGGTAACGTTGAAGGTGCGTCTGTTAGGGTGTATTTTAAGGGTTTAGTGAGTGAAGAGACTGTGAGAGGGGAGAAAGTTTCGTTGGCTGGGATTGGTGTTGCGGTTTGTGATTTGACTGATAATTTGATATTTGAAGTTTCTAAATCCGTGGTTGGGAATGGAACTAGTAAAATTGCTGTGGAGCTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTATTGCTTTGGATTTGACGCATGTTATTTATTATGGTGATTACTATCCACTTTTCCAATTTTTAAGTGGAAAATGGCCTGCGAAACAGCGGAAGATTGCTATGCTAGTTAATCAGGTGAATCTGCTCCAAAGAAAATTTGAATACTGCAGTCCAAGGCTTGTGGCAAGACATGATCTGAAATTTGCATTAAAGCTTGCAAGAGATGCAATTGTTTCTCAGTCCAATAGGCCTGCTGAATCTAGCAGTGTAAACAGTCTGAATGAAACTTGTGTCATTTGTTTGGAGGATACTGATCGTAGTCAAATATTTTCAGTTGATGAATGTCAGCACAGGTATTGCTTTTCTTGCATGAAGCAACATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAATGCCCTCACGAGGGATGCAAGAATGAACTTCTAATTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAATTGAAACCATGCAACAACGAAAATTGGAAGCTTCAATTCCGCTTACTGAGAAAATCTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAAGTTTTAGATTACTCCCACAGTCTTATGGGCTCTGAACAATCAGTACCCAAGAAATGCGTGAAATGTCATGGTCTTTTCTGTTTCAGCTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTATACTTACAAAAGGTTGAATCCTAATCCTCCAGCAGAAGATGTGAAGTTGAAGTTTCTAGCATCAAGGAGTCTTTGGCGGCAGTGCGTCAAGTGTAACCATTTGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGATGTAGTTACGAATTTTGCTATAAATGTGGAGCTGAGTGGAAGGACAAAAAGGCAACATGTTCTTGTCCACTTTGGCAAGAGGAAAATATTTGGTTAGAAGATCATCAGGACGACGAAGATGAGGATGACTCTGATTATGATGATGACTTTTATTAG 1686 0.4294 MYKTYSLWLFTEQSHSMDSTEDLHFLLTAQRRELTAAESMESDLDFAFHLQLQEALAASLTDHPSSSMGAILVELPLDDDDVSKAPSLQLEELARMEIEMNDREQSERIMREAKVDINRRIHDQKMASEILNFPGEDWDEWGDNFEKPFGEGSSSSSGLKSGNVEGASVRVYFKGLVSEETVRGEKVSLAGIGVAVCDLTDNLIFEVSKSVVGNGTSKIAVELKALIEAFNAVIALDLTHVIYYGDYYPLFQFLSGKWPAKQRKIAMLVNQVNLLQRKFEYCSPRLVARHDLKFALKLARDAIVSQSNRPAESSSVNSLNETCVICLEDTDRSQIFSVDECQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKNELLIDSCRKFLTSKLIETMQQRKLEASIPLTEKIYCPYPRCSALMSKTEVLDYSHSLMGSEQSVPKKCVKCHGLFCFSCKVPWHSGMTCYTYKRLNPNPPAEDVKLKFLASRSLWRQCVKCNHLIELAEGCYHMTCRCSYEFCYKCGAEWKDKKATCSCPLWQEENIWLEDHQDDEDEDDSDYDDDFY* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5110 561 SMART ibrneu5 475 532 IPR002867 -
Psa7g5110 561 SMART ibrneu5 390 462 IPR002867 -
Psa7g5110 561 Pfam Reverse transcriptase-like 186 302 IPR002156 GO:0003676|GO:0004523
Psa7g5110 561 ProSitePatterns Zinc finger RING-type signature. 341 350 IPR017907 -
Psa7g5110 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 403 IPR013083 -
Psa7g5110 561 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 57 540 IPR031127 GO:0004842|GO:0016567
Psa7g5110 561 Pfam IBR domain, a half RING-finger domain 481 530 IPR002867 -
Psa7g5110 561 Pfam IBR domain, a half RING-finger domain 392 462 IPR002867 -
Psa7g5110 561 ProSiteProfiles Zinc finger RING-type profile. 323 367 IPR001841 -
Psa7g5110 561 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 57 540 - -
Psa7g5110 561 ProSiteProfiles TRIAD supradomain profile. 319 542 IPR044066 -
Psa7g5110 561 Gene3D - 168 310 IPR036397 GO:0003676
Psa7g5110 561 SUPERFAMILY RING/U-box 476 539 - -
Psa7g5110 561 SUPERFAMILY RING/U-box 405 467 - -
Psa7g5110 561 SUPERFAMILY RING/U-box 321 402 - -
Psa7g5110 561 Gene3D - 459 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5110 Psa-Chr7 448447364 448451621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5110 168 521 C3H Transcription Factor Family AT2G19610 32.500 3.91e-60 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5110 - - aprc:113858620 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5110 7 448447364 448451621 Psa7g5110 7 448447364 448451621 ECH