Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5109 ATGGAAAGTACTACTAGTGACACATGCTCTGTTCCATTTTCTCATAACTCTTCAACTTCTTCGTCTAATTCACCTCCACAAGCTGTTGTTGTTATGAGCCCTTGTGCTGCTTGCAAGATTTTGAGGAGAAGATGTTCTCCTGATAAATGTGTTTTGGCTCCTTATTTTCCTCCTACTGATCCTGCCAAGTTTACCATTGCTCATAGAGTCTTTGGTGCTAGCAACATCATCAAATTCCTACAGGAACTACCTGAGGCACAAAGATCTGATGCAGTTACAAGCATGGTTTATGAGGCTAGTGCAAGAATTAGAGATCCTGTTTATGGTTGTGCTGGAGCAATTTGCCAACTCCAAAAGCAAGTGAATGAGCTTCAAGCACAATTGGCCAAATCACAAGCAGAGGTTGTAAACATGCAGCTCCAACAAGCTAATCTTGTGGCTTTATTTTGCATGTCACAAAGTGAACAAGAATCACCACAACAATCTATGGATGATTTCATTCAAAGTCCTTCCCATAGTAATGGCTATCAAATTGGTTTGAACTTTCTTGAGGAGAACAATAGTCTAAATTCAATGTGGGAGCCACTTTGGACATGA 597 0.4037 MESTTSDTCSVPFSHNSSTSSSNSPPQAVVVMSPCAACKILRRRCSPDKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPEAQRSDAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAEVVNMQLQQANLVALFCMSQSEQESPQQSMDDFIQSPSHSNGYQIGLNFLEENNSLNSMWEPLWT* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5109 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 195 - -
Psa7g5109 198 Coils Coil 114 141 - -
Psa7g5109 198 MobiDBLite consensus disorder prediction 1 25 - -
Psa7g5109 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 15 195 - -
Psa7g5109 198 Pfam Lateral organ boundaries (LOB) domain 34 132 IPR004883 -
Psa7g5109 198 ProSiteProfiles LOB domain profile. 33 135 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5109 Psa-Chr7 448432554 448434188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5109 30 198 AS2 family AT2G28500 66.129 1.19e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa7g5109 LOB 3.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5109 - - ccaj:109798760 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5109 7 448432554 448434188 Psa7g5109 7 448432554 448434188 ECH
Psa5g6368 5 541216450 541219962 Psa7g5109 7 448432554 448434188 ECH
Psa5g6368 5 541216450 541219962 Psa7g5109 7 448432554 448434188 PCT