Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5084 ATGAAAGTGGCAAGGTTCAAAGGGACTGAACGGGTCATTGGGACGAAAACATGCATCTATTGGCTCAATGGAAGATGCAATAGAAATCATTGTAGGTTTTTGCACGGTGAATCACCATCATACGCGTCAACTAATTCTTGGAATCATAATGAAAGGAAGGGACGTTTCTCTTCGACATCGTATCATAATGCAAAGAAGGGCCTTCCCAAAGATGATACTAAAACTCTTTTAAATGGAAAGATTGGAGATGACAAGCTGCCACCCAAACATAACACTAAGACTATTCTGATTAGAAGGACCATGGATGACAAGTTGCTTCCCAAACATGAAGCTGAGAATTTCTTAAATCGAAAGATTGGAGACGAGAAGTCGCCTCCCAAACATGCTACTGTTGGAGATGGCAGAGAGAAGACGCGAGTTGCTAAGGTTTCTCCAAAGCATATCTGCAAATATTGGATGAATGGCGATTGTGTTCATGGTGAACAGTGCCAGAATTTACATTCATGGTTTTATGGTGATGGCTTTGCCACATTAGCAAAGCTTCAAGGACACAAGAAGCTTGTCACTGGAATTGCACTTCCACATGGATCAGACAAACTTTATTCTGGCAGCACTGATGGGACACTTCGGACATGGGACTGTCTTACTGGTCAATGCACTAATGTGATGAATCTTGGTGCTGAAGCTACCTCTTTGATCAGTGAGGGTCCATGGATTTTTGTTGGTCTGCCTAACACTGTCAAGGCATGTAATATTCAGACTGATTCACAGTTAACTCTTGCTGGACCTAACGGACGAGTCCTTGCCATGATTGTTGGCAATGATACACTCTTAGCAGGAGCAGAGGACGGTGTAATTTCTGCATGGAGAGGCAGTTCTAAACCCAATTCCCCTTTTGAACTGGTTGCATCACTATGTGGTCACACTAAATCTGTTGTTTGCCTGGCTGTTGGATGTAACAAGATGTTATACTCAGGATCCAAGGATCAAAGCATTAAGGTTTGGGATCTAGACACATTTGAGTGTAAAATGACACTCAACGCACATACAGGCGAAGTCAGGTCCCTTATTTGCTGGGACAATTTCTTGTTATCTGGTTCATCAGACTGCACTATCAAGGTCTGGTATAAAACTGTTAAGGAAACTTTGGAAGTTGCATATTCACACAATGTAGAAAATGCCGTTGTTGCACTCTCTGGGATGACTGATCCAGAAAATAAGCCTATATTGCTCTGCTCTACTAGTGACAATTCAGTTCGCCTCTATGAACTGCCATCATTTGCAGAGAGGGGTAAACTGTTTGCGAAACAAGAAGTTGGATTAATTGATATAGCTCCCGGTGGACTCTTCTTCATCGGAGACAGAACTGGTTTGCTGACTGTCTGGAAATGGTTGGAAAATCCCAAGGTTGCAATATCCTCTTGA 1425 0.4253 MKVARFKGTERVIGTKTCIYWLNGRCNRNHCRFLHGESPSYASTNSWNHNERKGRFSSTSYHNAKKGLPKDDTKTLLNGKIGDDKLPPKHNTKTILIRRTMDDKLLPKHEAENFLNRKIGDEKSPPKHATVGDGREKTRVAKVSPKHICKYWMNGDCVHGEQCQNLHSWFYGDGFATLAKLQGHKKLVTGIALPHGSDKLYSGSTDGTLRTWDCLTGQCTNVMNLGAEATSLISEGPWIFVGLPNTVKACNIQTDSQLTLAGPNGRVLAMIVGNDTLLAGAEDGVISAWRGSSKPNSPFELVASLCGHTKSVVCLAVGCNKMLYSGSKDQSIKVWDLDTFECKMTLNAHTGEVRSLICWDNFLLSGSSDCTIKVWYKTVKETLEVAYSHNVENAVVALSGMTDPENKPILLCSTSDNSVRLYELPSFAERGKLFAKQEVGLIDIAPGGLFFIGDRTGLLTVWKWLENPKVAISS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5084 474 Gene3D - 160 299 IPR015943 GO:0005515
Psa7g5084 474 Gene3D - 300 473 IPR015943 GO:0005515
Psa7g5084 474 Pfam WD domain, G-beta repeat 300 336 IPR001680 GO:0005515
Psa7g5084 474 Pfam WD domain, G-beta repeat 341 375 IPR001680 GO:0005515
Psa7g5084 474 Pfam WD domain, G-beta repeat 178 213 IPR001680 GO:0005515
Psa7g5084 474 ProSitePatterns Trp-Asp (WD) repeats signature. 323 337 IPR019775 -
Psa7g5084 474 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 13 472 - -
Psa7g5084 474 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Psa7g5084 474 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Psa7g5084 474 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Psa7g5084 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 213 - -
Psa7g5084 474 SMART WD40_4 382 423 IPR001680 GO:0005515
Psa7g5084 474 SMART WD40_4 253 290 IPR001680 GO:0005515
Psa7g5084 474 SMART WD40_4 339 376 IPR001680 GO:0005515
Psa7g5084 474 SMART WD40_4 298 336 IPR001680 GO:0005515
Psa7g5084 474 SMART WD40_4 174 213 IPR001680 GO:0005515
Psa7g5084 474 SMART c3hfinal6 14 37 IPR000571 GO:0046872
Psa7g5084 474 SMART c3hfinal6 144 169 IPR000571 GO:0046872
Psa7g5084 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 339 - -
Psa7g5084 474 PANTHER - 13 472 IPR044715 -
Psa7g5084 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 345 IPR001680 GO:0005515
Psa7g5084 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Psa7g5084 474 SUPERFAMILY CCCH zinc finger 146 168 IPR036855 GO:0046872
Psa7g5084 474 ProSiteProfiles Zinc finger C3H1-type profile. 148 170 IPR000571 GO:0046872
Psa7g5084 474 SUPERFAMILY WD40 repeat-like 177 470 IPR036322 GO:0005515
Psa7g5084 474 ProSiteProfiles Zinc finger C3H1-type profile. 13 38 IPR000571 GO:0046872
Psa7g5084 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 375 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5084 Psa-Chr7 446406973 446410058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5084 145 340 Eukaryotic Initiation Factors Gene Family AT2G46290 26.027 1.05e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa7g5084 WD40 0.00023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5084 - - mtr:MTR_8g028700 626.32