Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5075 ATGTTAGATCTTAATCTATATGATGCGAACTCGGCCGATTCGGCTCAGAACATCGACTCGCCAATGATTTCTGAGAATTTTCATCAAACTTCATGGAATCAAATGGTGGAATCAGGAACATCGAATTCCTCCATCGTTAATGCGGACGGTTCAAGCAACAACGCAGGTGATGAGGACTCGTGCTCCACGCGCGTAAATGACGTGTTCACCATCAGTTTCGATATTCTTAAAATGGAAGGTTCAAACGACGTCGTAACGAAGGAGTTTTTCCCTGTGACCGGAGGTGATGAAGGTTTGTCCAATAATTGGAAGTTGCAAACTACTTCGTCGTTTCCGGTTAGGAATGGTTCGTTTGATCTATCGTTTAATCAGAAAGAAGAGATGAAGTTTGTTCAACCTCCTCAACAAGCTAAAAAGAGTAGGAGGGGACCAAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGGACTGGTAGATGGGAATCTCATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCAAGAGCCTATGATCGTGCTGCTATTAAGTTCAGGGGAGTTGGTGCTGACATAAATTTCAATCTGAATGATTATGAGGATGATCTTAAACAGACGAAGAATTTATCCAAAGAGGAGTTTGTGCACATACTTCGTCGTCAAAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTGACACTCCACAAGTGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCCAAAGCAATGGAAGGGAAGCAGTGACTAATTTTGAGCTCAGCACATACGAAGGAGAGATGAAATCTACAGCCATCAATGATGGCGGCAGTCCAAATCTCGATCTCAATTTGGGCATAACTAAACCAGGACCGGTTCCCAAAGAAAATTGGGGGAAATTTCACTTCCCCTCTGTCTCTTACACAAGTTCAAGGATGGAAACCAATATTTCAGGAAATGGTAATTCATCTTTAAAAAGGCTAATAGTAACTGAAGAGCGTCATTCTTTACGGAATGACATGTATCCCGGTTTCTTTCCCAACGAGGAAAGAGCAGATGGTATCAACAAAGATTCTTTAAAAGGACACCCCATTTGGGCATGGCAAAGTAATGGCCAGGTCACTGCCCCAGTGGCACGGGTCTCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTCCGTTTCCATCTACTCCCTTATTTCCACCAAGATCTATGAGCTCAATTCCCCCGAGTCTCTATTTTACTTCGCCCAATGCACCTAACAGCAACACATCTCAAAAATATTATCAGGTTATTAAGTCCCCGCAAGCACCGTCCTAG 1440 0.4368 MLDLNLYDANSADSAQNIDSPMISENFHQTSWNQMVESGTSNSSIVNADGSSNNAGDEDSCSTRVNDVFTISFDILKMEGSNDVVTKEFFPVTGGDEGLSNNWKLQTTSSFPVRNGSFDLSFNQKEEMKFVQPPQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIQSNGREAVTNFELSTYEGEMKSTAINDGGSPNLDLNLGITKPGPVPKENWGKFHFPSVSYTSSRMETNISGNGNSSLKRLIVTEERHSLRNDMYPGFFPNEERADGINKDSLKGHPIWAWQSNGQVTAPVARVSAAASSGFSISAPFPSTPLFPPRSMSSIPPSLYFTSPNAPNSNTSQKYYQVIKSPQAPS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5075 479 Pfam AP2 domain 241 288 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 SUPERFAMILY DNA-binding domain 241 301 IPR016177 GO:0003677
Psa7g5075 479 MobiDBLite consensus disorder prediction 129 151 - -
Psa7g5075 479 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 437 - -
Psa7g5075 479 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 437 - -
Psa7g5075 479 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Psa7g5075 479 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 CDD AP2 150 205 IPR001471 GO:0003700|GO:0006355
Psa7g5075 479 Gene3D AP2/ERF domain 241 301 IPR036955 GO:0003700|GO:0006355
Psa7g5075 479 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5075 Psa-Chr7 445997587 446000935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5075 74 325 AP2-EREBP Transcription Factor Family AT4G36920 64.552 1.41e-95 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Psa7g5075 AP2 5.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5075 K09284 - gmx:100788303 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5075 7 445997587 446000935 Psa7g5075 7 445997587 446000935 ECH