Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5073 ATGAATAATAATGTTGGGAACAAAAGTTTGGGAGAACAAAATCGTATGGTTATTGAGGGGAAGAGTCTCGATAATAGAGAAGTTAATGAAGGGATAGGTTCTGAATCATCGACTGGAAATGACACGAGATTTAGTAAGGTAACGAAAGACGGAAACGGTGGGTTGAAGGGATCGACTCAAATCCATGAGAGGTTTCAGGTTTCACCGCAACCATTACCCCGTGCTCCAGTTACTTACTGGGAAAGGTTTCTCCCTGTTACGTCGATAAAAGTTCTGCTGGTGGACGATGATGATTCCACACGTAATGTTGTGTGTGCTCTGTTAAGGAATTGTGGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGCTCTAGAAGATCCAGGAAATAGAATTGATCTTGTTCTAACTGAGGTAGCTATGCCTTTTGTATCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACATAGCTCTGAAGAATATTCCTGTGATTATGATGTCATCTCACGATTCTATGGGTATTGTCTTTAAGTGTTTGTCAAAAGGAGCAGCTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGTGATAGTGGGAGTGAAAGTGGGACAAATACCCGGAAATTTGCAAAGTCAAGAAGCATCTGTGCATATGACAACAATAGTGGTAGCAGTGATGAGAATGATTATGGAAGCAGAGGCTTGAGTGTTCGAGATGGAAGTGACAAAGGAAGTGGAACTCAGAGTTCATGGACTACAAATCTAGCTCAAGTTAGTAGCAGCCCTCGTAAACAATCTCATGATACTCCTGATAGCACGTGTGCCCAAGTGGTGCTTACCAAGTCTGAAAACATTAGTAGTAAGTGGGTCCAGGCCACAGAAAAAGAGTGCCACAACCCGATTGATCATCCTGATGATATTGCAATGGGTAAAGATTTAGCTATGGGAATATCTTTGAACATGGAAGAAAAGCATCCACATGAGGAACTATCTAACAATCCAATGTGTAAAGGAGTTAATAAGATGTCTGATATAGATGGTATGCAGCTCAATAAAGGACATAGTAGTGTTTGTGAAAAAGTACAACCGGAAGAGAACAGTGATAAAACCAGGATGAAGGAAAATCAGGATATGAATGTAGGTGTTACTGATAGCAGCAGTTCACAGGCTGAAAGCAGAGATTTGAATACTTCAAATGGTTTTTCTGGTTTTGCAAAATCAAAAACAAGTTGCTTTAAACAGCACCCATCACTTGAACTAACATTGAAAAGGATGGGAGAAGTAAAAGATGCTGAACATGTCACAGGTGATGAATGTAATGTTTTGAGACATTCAGATCTGTCGGCATTCTCCAAATATAATACAGCCTCCGCTTACCAGGCTCAGACTGGAAATGTAGGAAGCTGTTCCGCACTAGACAATAGTTCAGTTGCACCAAATACAGAGACAATACAGAACTTCACATCCCTTTCAAATGCCACTCTTCCAAATCAACAGTCTAATGGGAGCAACAACATCAACGACCTGGCTTCCACTAATACACACCTTAGCACCAAACCTGAAATTTTTGACAAGAAACCCGAGTCTTCGAGAGGGATTGGCTCTTTTATTTCTTCTGAACTCCAAGTCGTGCAAAATAATAGTGTCTCTACATCATCTCAGAAGAAGACTTCTACCCAGGAAGAATGCGCCGGAAGCGTTAAAGGACAGGTAGGAGGCTTTGAACAAGGATTCCAAGTCGAGCATGCTCAACATCAACTTCATCATTGTAACCACATCGTCCACAAGGAGGCAGTAGATCTCCGATCAGTTCATGATCGCTTAGTTGAAAGCACAACCAAAGATGATCAGCAATGTATGCCAAATGCGTTTGGAGAGCCAGCAGAAAGTAATGGCACAACTGCAAAATATGGTTTGGATGGAAGTGCAGCTGAGAGTGATCATGGGAGCAATGGGCAGGATGGAAGCAACACTTTGACAATCAGAATGATAAATGTGAGAAACGGCAATGTGGAAGCTGGGGGCTTTGGAATTAGTGGCATTGATAAAGTAAACATTGGAAGTGGGTCTTATGAACAACGATTTGCATTGAGAGAGGCTGCCTTGACAAAATTTCGCCTAAAGAGAAAAGAAAGATGCTTTGAGAAGAAGGTTAGATATCAGAGCAGGAAAAAATTGGCAGATCAGCGGCCGCGTGTTAGGGGACAATTTGTTAAACAAATAGTGTATGGTACCAATGAAGAAAATAAAGAAAGCGAGGAACTTGTATCTATGGATGATTCTAACAATGATCCCAAACAACACCAATCAAATTGCTGA 2376 0.4116 MNNNVGNKSLGEQNRMVIEGKSLDNREVNEGIGSESSTGNDTRFSKVTKDGNGGLKGSTQIHERFQVSPQPLPRAPVTYWERFLPVTSIKVLLVDDDDSTRNVVCALLRNCGYEVTAVSNGLQAWKALEDPGNRIDLVLTEVAMPFVSGIGLLCKIMSHIALKNIPVIMMSSHDSMGIVFKCLSKGAADFLVKPIRRNELKNLWQHVWRRCHSSSDSGSESGTNTRKFAKSRSICAYDNNSGSSDENDYGSRGLSVRDGSDKGSGTQSSWTTNLAQVSSSPRKQSHDTPDSTCAQVVLTKSENISSKWVQATEKECHNPIDHPDDIAMGKDLAMGISLNMEEKHPHEELSNNPMCKGVNKMSDIDGMQLNKGHSSVCEKVQPEENSDKTRMKENQDMNVGVTDSSSSQAESRDLNTSNGFSGFAKSKTSCFKQHPSLELTLKRMGEVKDAEHVTGDECNVLRHSDLSAFSKYNTASAYQAQTGNVGSCSALDNSSVAPNTETIQNFTSLSNATLPNQQSNGSNNINDLASTNTHLSTKPEIFDKKPESSRGIGSFISSELQVVQNNSVSTSSQKKTSTQEECAGSVKGQVGGFEQGFQVEHAQHQLHHCNHIVHKEAVDLRSVHDRLVESTTKDDQQCMPNAFGEPAESNGTTAKYGLDGSAAESDHGSNGQDGSNTLTIRMINVRNGNVEAGGFGISGIDKVNIGSGSYEQRFALREAALTKFRLKRKERCFEKKVRYQSRKKLADQRPRVRGQFVKQIVYGTNEENKESEELVSMDDSNNDPKQHQSNC* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5073 791 ProSiteProfiles CCT domain profile. 717 759 IPR010402 GO:0005515
Psa7g5073 791 SUPERFAMILY CheY-like 88 215 IPR011006 -
Psa7g5073 791 SMART REC_2 89 204 IPR001789 GO:0000160
Psa7g5073 791 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160
Psa7g5073 791 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 751 IPR045279 GO:0009736
Psa7g5073 791 MobiDBLite consensus disorder prediction 260 292 - -
Psa7g5073 791 MobiDBLite consensus disorder prediction 1 45 - -
Psa7g5073 791 Pfam CCT motif 717 759 IPR010402 GO:0005515
Psa7g5073 791 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 30 751 - -
Psa7g5073 791 MobiDBLite consensus disorder prediction 767 791 - -
Psa7g5073 791 MobiDBLite consensus disorder prediction 372 415 - -
Psa7g5073 791 MobiDBLite consensus disorder prediction 256 292 - -
Psa7g5073 791 ProSiteProfiles Rhodanese domain profile. 90 134 IPR001763 -
Psa7g5073 791 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160
Psa7g5073 791 MobiDBLite consensus disorder prediction 395 415 - -
Psa7g5073 791 MobiDBLite consensus disorder prediction 29 45 - -
Psa7g5073 791 Gene3D - 88 241 - -
Psa7g5073 791 MobiDBLite consensus disorder prediction 377 394 - -
Psa7g5073 791 CDD psREC_PRR 91 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5073 Psa-Chr7 445763618 445769891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5073 73 473 Response Regulator Gene Family AT5G60100 47.087 1.73e-84 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Psa7g5073 Response_reg 6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5073 K12129 - gmx:100785796 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5073 7 445763618 445769891 Psa7g5073 7 445763618 445769891 ECH
Psa6g2856 6 233659887 233675414 Psa7g5073 7 445763618 445769891 ECH