Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5020 ATGGCTCCTCCAAAAGCTGCCAAGGCAGTCAAGTCAGGCTCTGCCATCAAGAAGAAGGCGAAGAAGATCCGAACAACTGTCACTTTCCACCGCCCAAAGACCCAAACTAAGGATAGAAACCCCAAATACCCTAGGATTAGTGCCACCCCAAGGAATAAACTTGATCACTACCAGATCTTGAAGTTCCCACTCACCACTGAATCAGCCATGAAGAAAATTGAGGATAACAACACTTTGGTCTTCATTGTTGACTTGCGTGCTGATAAGAAAAAGATTAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCAAAGAAGGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTAAGGTTGACTCCTGATTACGACGCACTTGATGTAGCAAACAAGATTGGGATTATCTAA 420 0.4429 MAPPKAAKAVKSGSAIKKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5020 139 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 5 139 - -
Psa7g5020 139 Hamap 50S ribosomal protein L23 [rplW]. 59 139 IPR013025 GO:0003735|GO:0005840|GO:0006412
Psa7g5020 139 Pfam Ribosomal protein L23, N-terminal domain 5 48 IPR005633 -
Psa7g5020 139 TIGRFAM uL23_arch: ribosomal protein uL23 63 139 IPR019985 GO:0003735|GO:0005840|GO:0006412
Psa7g5020 139 ProSitePatterns Ribosomal protein L23 signature. 117 132 IPR001014 -
Psa7g5020 139 PANTHER 60S RIBOSOMAL PROTEIN L23A 5 139 IPR013025 GO:0003735|GO:0005840|GO:0006412
Psa7g5020 139 Gene3D - 20 139 IPR012677 -
Psa7g5020 139 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 56 132 IPR012678 GO:0003735|GO:0005840|GO:0006412
Psa7g5020 139 MobiDBLite consensus disorder prediction 1 22 - -
Psa7g5020 139 Pfam Ribosomal protein L23 59 121 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5020 Psa-Chr7 441625537 441627052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5020 12 139 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.625 5.47e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5020 K02893 - tcc:18590760 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5020 7 441625537 441627052 Psa7g5020 7 441625537 441627052 ECH
Psa5g6488 5 548420513 548422899 Psa7g5020 7 441625537 441627052 ECH