Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5016 ATGATTCAAATATCGCTGTTGCACATTCATGGACCTGCTAGGTGTTACAGACAGATCAAGAACAAGCCATACCCAAAGTCACGTTTCTGTCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTCGGCATGAAGAAGAAAGGTGTTGACGAGTTTCCTTTCTGTGTGCATCTTGTTAGTTGGGAAAAGGAAAATGTATCAAGTGAGGCATTGGAAGCTGCTAGGATTGCCTGCAACAAGTACATGTCGAAATTTGCCGGAAAGGATGCATTCCACTTGAGGGTCAGAGTGCATCCGTTCCATGTTCTTAGGATCAACAAGATGCTCTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGAGCTTTTGGAAAGCCACTTGGAACATGTGCTAGGGTTGCTATTGGTCAGGTGCTTCTTTCCGTCCGATGCAAGGACAACAATAGCCATCATGCACAGGAGGCACTCCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATCGTCAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGAGTCGATTACCTCAAGTACAAATCAGAGAACAGGATTTTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCATTGGCGAATCGTCAACCTGGGAGAGCTTTTATTGATGCTAGTACTCCTACTTCTTAG 693 0.4603 MIQISLLHIHGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRVDYLKYKSENRILPDGVNAKLLGCHGPLANRQPGRAFIDASTPTS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5016 230 ProSitePatterns Ribosomal protein L10e signature. 115 136 IPR018255 GO:0003735|GO:0005840|GO:0006412
Psa7g5016 230 Gene3D Ribosomal protein L10e/L16 10 224 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa7g5016 230 PANTHER 60S RIBOSOMAL PROTEIN L10 12 226 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa7g5016 230 TIGRFAM uL16_euk_arch: ribosomal protein uL16 12 181 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa7g5016 230 Pfam Ribosomal protein L16p/L10e 19 173 IPR016180 GO:0003735|GO:0005840|GO:0006412
Psa7g5016 230 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 12 226 - -
Psa7g5016 230 SUPERFAMILY Ribosomal protein L16p/L10e 12 180 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa7g5016 230 CDD Ribosomal_L16_L10e 48 173 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5016 Psa-Chr7 441436509 441438173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5016 12 227 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.963 1.03e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5016 K02866 - pvy:116105818 436.417