Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4997 ATGGTTCAAATTCCAGAAGTTAACTCTAACATATTCTACTTCCCTCAAGGTCATGCTGAGCATGCTTATCAACCTGTCCATTTTCCTGCTGACTTCAATATTCCATCCCAAATTCCATGTAGAGTTGCAGCTATCCATTATAGGGTTGATCCTCACACAGATGAAGTCTATGCAAAACTCAGGCTTGTTCCTCTCCATGTTAGCCAAGTTAGATTTGATGATGACACTGTTGGTGGCATCGATAACATGTCTGAAACTAAGTATCAGTCTTATACGAAAACGTTGACACAATCTAATGCAAACAATGGTGGTGGATTCTCTTGTCCTAGGAAATGTGCAGAAACACTTTTTCCTCCATTAGACTATTCAGATATGCTTCCTACTCAGGACATTTTTCCCATGGATGTGCATGGAGAAACATGGAGATTTAGACATGCTTATAGGGGCATGCCGAAGCGGCATCTGTTAACAACTGGGTGGAGTGACTTTGTGACTGATAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGAGAGATGAACACAGTGATCTTCATGTTGGAATAAGAAGGTCTAAAAAACGAAACGACTGTATATTTAACTTTTCATCAAAGAGGAAACTTGGACCATCCTACAATAGACTTACTTCCTCTTTTGGAGAGTTGAGAATAAGTGATAAGGTGATGGGAATTGGGAAAGTGAAGGCTGAAGATGTTCTTGAAGCAGTAAGACTTGTTGTCAATATGCAGCCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAACCCTCTTTAATTAGAAAAGCACTTCAGATTAGGTGGTGGTGTGGAATGAGGTTCAAGATGGCCATGGAAACCGAAGACTCGTCAAGGACACATTGGTTTGTGGGAGAAATTGCTTCTGTTGAGGCTGTTGATCCCGCATGTCCTGACTCTGTTTGGAGACTTCTGCGGGTTACATGGGATGAAGCTGTAGTTACAAATATGAAAATGCTGAATCCGTGGGAAGTCGAAATAGTATGA 1041 0.414 MVQIPEVNSNIFYFPQGHAEHAYQPVHFPADFNIPSQIPCRVAAIHYRVDPHTDEVYAKLRLVPLHVSQVRFDDDTVGGIDNMSETKYQSYTKTLTQSNANNGGGFSCPRKCAETLFPPLDYSDMLPTQDIFPMDVHGETWRFRHAYRGMPKRHLLTTGWSDFVTDKLLVSGDSLVFVRDEHSDLHVGIRRSKKRNDCIFNFSSKRKLGPSYNRLTSSFGELRISDKVMGIGKVKAEDVLEAVRLVVNMQPFDVVYYPRVGTPEFFVKPSLIRKALQIRWWCGMRFKMAMETEDSSRTHWFVGEIASVEAVDPACPDSVWRLLRVTWDEAVVTNMKMLNPWEVEIV* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4997 346 Gene3D - 280 346 - -
Psa7g4997 346 Gene3D - 89 193 IPR015300 -
Psa7g4997 346 SUPERFAMILY DNA-binding pseudobarrel domain 86 194 IPR015300 -
Psa7g4997 346 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa7g4997 346 Pfam B3 DNA binding domain 92 192 IPR003340 GO:0003677
Psa7g4997 346 CDD B3_DNA 90 191 IPR003340 GO:0003677
Psa7g4997 346 ProSiteProfiles B3 DNA-binding domain profile. 91 193 IPR003340 GO:0003677
Psa7g4997 346 PANTHER AUXIN RESPONSE FACTOR 1 346 - -
Psa7g4997 346 SMART B3_2 91 193 IPR003340 GO:0003677
Psa7g4997 346 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 346 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4997 Psa-Chr7 439727773 439730506 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4997 1 346 B3 DNA Binding Superfamily AT4G30080 50.949 5.82e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa7g4997 B3 2.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4997 - - mtr:MTR_7g101280 456.062