Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4990 ATGTCTGCAGCTCTTGATATGACTCTCGACGACATCATCAAGAACAACAAAAAATCTGGATCCGGAAACTCCAGAGGCCGATCCAGACCCGCACCCGGTCCTGGACCCGCTCGCCGGGCTCCTAACCGCATCTCCAACCGTGCCACACCTTACTCCGCCGCTAAGGCGCCGGAGACGACGTGGCAGCATGATTTGTATGGAGATCAGCATGTGGCTGCGGGTTTTCCCGCTCAAGGTGGTCGTGCGCCTTCCATAGAAACTGGAACCAAGCTCTATATTTCTAATTTGGATTACGGTGTTTCCAATGATGATATTAAGGAATTATTTTCTGAAGTTGGTGACTTGAAACGACACGGCGTTCATTACGACAGGAGTGGAAGATCAAAGGGTACTGCAGAAGTAGTCTTCTCACGGCGACAGGATGCTGTTGCTGCTGTGAAGAGATACAATAATGTTCAACTGGATGGGAAACCAATGAAGATAGAGATTGTTGGAACAAACATTTCTACACCTGGTGCAGCTCCTGCTGTAAATGCCGCTCTTGGAAATTTTAATGGAATTCTTCCAAGTGGTCAAGGAAGGGTTGGAGATTTCCGAGGGCAGGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGTAGCGGTGGAAGTCGTGGCGGTGGTCGTGGTGCCGGACGCGGTAGAGGTCGCGATGAAAAGGTATCTGCAGAAGATCTTGATGCTGAGCTGGAGAAGTATCATGCAGAGGCCATGCAAATAAACTAG 777 0.4994 MSAALDMTLDDIIKNNKKSGSGNSRGRSRPAPGPGPARRAPNRISNRATPYSAAKAPETTWQHDLYGDQHVAAGFPAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPAVNAALGNFNGILPSGQGRVGDFRGQGGRGQGIRRNRGRGRGSGGSRGGGRGAGRGRGRDEKVSAEDLDAELEKYHAEAMQIN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4990 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Psa7g4990 258 CDD RRM_THOC4 89 163 - -
Psa7g4990 258 Pfam C-terminal duplication domain of Friend of PRMT1 199 252 IPR025715 -
Psa7g4990 258 MobiDBLite consensus disorder prediction 196 243 - -
Psa7g4990 258 SUPERFAMILY RNA-binding domain, RBD 30 163 IPR035979 GO:0003676
Psa7g4990 258 MobiDBLite consensus disorder prediction 228 243 - -
Psa7g4990 258 Gene3D - 77 242 IPR012677 -
Psa7g4990 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Psa7g4990 258 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 257 - -
Psa7g4990 258 SMART FoP_duplication_2 188 258 IPR025715 -
Psa7g4990 258 MobiDBLite consensus disorder prediction 1 54 - -
Psa7g4990 258 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 257 - -
Psa7g4990 258 SMART rrm1_1 90 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4990 Psa-Chr7 439431467 439435615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4990 88 191 Eukaryotic Initiation Factors Gene Family AT1G71770 28.205 2.47e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4990 K12881 - gmx:100775827 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4990 7 439431467 439435615 Psa7g4990 7 439431467 439435615 ECH