Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4987 ATGCGCATAGCGAATAATAGAACTCTTCTTCTCCAATGTTCAGCTTTACCCTTACCTCAATTGTTTCTACGCGTGCGCCATCATTCATCTACCAAATTGTTCGTCGCAGGGCTTTCCTATAACACGAATGAAACGGTCCTAAGAGACACATTTGAACGACATGGGGAAATCATTGAAGTTAAAGTTATATGTGATCACAAGACTGGGGAATCAAAAGAGTACGGATTTGTTAGGTTCAATTCTGAAACTGCAGCTGCCACAGCTCGCAAAGAATTGCACGGAAAGATAGTAGATGGCAGACGCATTCGAGTGGGTTATGCGCACAAAGGGTGA 333 0.4324 MRIANNRTLLLQCSALPLPQLFLRVRHHSSTKLFVAGLSYNTNETVLRDTFERHGEIIEVKVICDHKTGESKEYGFVRFNSETAAATARKELHGKIVDGRRIRVGYAHKG* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4987 110 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 12 109 - -
Psa7g4987 110 Gene3D - 18 110 IPR012677 -
Psa7g4987 110 SMART rrm1_1 32 105 IPR000504 GO:0003723
Psa7g4987 110 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 12 109 - -
Psa7g4987 110 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Psa7g4987 110 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Psa7g4987 110 SUPERFAMILY RNA-binding domain, RBD 11 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4987 Psa-Chr7 439330109 439331313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4987 31 109 Eukaryotic Initiation Factors Gene Family AT3G16380 40.506 3.05e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4987 K13195 - gmx:100306540 144.05