Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4972 ATGGAGAGTGAGAGTGATCAGAATAACGAGATTATTGAAGAAGCGTCGAATGGAAATAATAATAATAACAACACTATTTCATCTAGTTCACGATGGAATCCAACGAAAGAACAAATAAGTGTTTTGGAGAATTTGTATAAGCAAGGAATAAAAACTCCGAGTGCTGATGAAATACAACAGATAACCGCTAGGCTTAGAGCGTATGGTCACATCGAAGGAAAGAATGTCTTTTACTGGTTTCAGAATCACAAAGCTAGACAGAGACAGAAGCAGAAGCAAGAAAATATTGCTTATTTCAATCGCTTTCTTCATAGACCTCAACCCATTTTTCCTTCACCAATCTGTCCCAATCCTATCTGTGCACCATATTGTGTACCACAGCAACACAGTCATGAATTCAGTTATTACACTCAAAATCCAAAACTGCTTCTACCTGCGGTAGGTTATAGAAGGAACCAAGGTGAAAAAGTTATGTCAAATGTCTGCAATAATCCAATGGTATATGAAAACAGCATGCAAAAGAGAATATCGGAATATGAAACGTTGGATCTGTTTCCTGTGCATCCAACTGGCATATTGGAAGGGAAAACAACTGACCAGGTGTCTTCTATTGTTTCCGTTTCCGCTGATAGTTCCACTGATACAAATTCTGGTTCTCCTCATCATGTTATCAATCAACAGAATCAACCCTTCTTTGACTTTTTTAATAATTCTGCAGGACAAGGTTCTTAG 732 0.377 MESESDQNNEIIEEASNGNNNNNNTISSSSRWNPTKEQISVLENLYKQGIKTPSADEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQENIAYFNRFLHRPQPIFPSPICPNPICAPYCVPQQHSHEFSYYTQNPKLLLPAVGYRRNQGEKVMSNVCNNPMVYENSMQKRISEYETLDLFPVHPTGILEGKTTDQVSSIVSVSADSSTDTNSGSPHHVINQQNQPFFDFFNNSAGQGS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4972 243 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 240 IPR044555 GO:0003700|GO:0099402
Psa7g4972 243 Gene3D - 29 97 - -
Psa7g4972 243 SUPERFAMILY Homeodomain-like 29 95 IPR009057 -
Psa7g4972 243 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Psa7g4972 243 CDD homeodomain 31 91 IPR001356 GO:0003677
Psa7g4972 243 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Psa7g4972 243 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 14 240 - -
Psa7g4972 243 SMART HOX_1 27 94 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4972 Psa-Chr7 438393493 438394670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4972 20 239 Wox Gene Family AT5G59340 43.307 1.37e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa7g4972 Homeodomain 6.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4972 - - pvu:PHAVU_011G064900g 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4972 7 438393493 438394670 Psa7g4972 7 438393493 438394670 ECH