Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4971 ATGAAGAGTGCTGCTTTTAAGTGCAAGACCTGTAGTAAAGAATTCCTTTCATTTCAAGCTCTTGGTGGACATAGGGCTAGCCACAATAAGCTTAAGCTAATTGGAAAAAAAGGTTCTTCTGGCAAGTTGCATATATGTTCTATTTGTGGGCTTCAATTTGCAACTGGACAAGCACTTGGAGGACACATGAGAAAACATAGAACAGGTCCAGTTCATGATTATGATCAAGATGACACCATGGCTAATGGTCCTAAGAGGTTTCATCTCTGCTTGGATTTGAACTTGACACCCTATGAGAATGATCTTAAGTTACTTAACTTCTTCTTTTTTGAGGCATTGAGTACTTTCACTTAA 354 0.3842 MKSAAFKCKTCSKEFLSFQALGGHRASHNKLKLIGKKGSSGKLHICSICGLQFATGQALGGHMRKHRTGPVHDYDQDDTMANGPKRFHLCLDLNLTPYENDLKLLNFFFFEALSTFT* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4971 117 SUPERFAMILY beta-beta-alpha zinc fingers 6 66 IPR036236 -
Psa7g4971 117 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Psa7g4971 117 PANTHER OS03G0279700 PROTEIN 4 103 - -
Psa7g4971 117 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 66 IPR013087 -
Psa7g4971 117 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Psa7g4971 117 PANTHER ZINC FINGER PROTEIN ZAT5 4 103 - -
Psa7g4971 117 SMART c2h2final6 6 28 IPR013087 -
Psa7g4971 117 SMART c2h2final6 44 66 IPR013087 -
Psa7g4971 117 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Psa7g4971 117 Pfam C2H2-type zinc finger 44 67 - -
Psa7g4971 117 Pfam C2H2-type zinc finger 5 30 - -
Psa7g4971 117 Gene3D Classic Zinc Finger 4 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4971 Psa-Chr7 438161938 438162554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4971 6 105 C2H2 Transcription Factor Family AT3G53600 49.107 2.83e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g4971 zf-C2H2_6 6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4971 - - adu:107476874 117.472