Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4960 ATGGAAGGAGCTTCATCATCCTCCACAACACCGGATCATGATGAAGAAATATTTCAAATATCTGATGAGAAATATGCAGAAGAATTACAATTACAAGAAGCATTATATTTCTCTCGTACTTCAAACACTACTGTAACAGAAGAAGAAGAAATTCAAGTAGTGGAAGAAAGAGTTGAGACTAAAACCCTAGTGAAAAGCCTCATACAGAAACTGAAAAACACTATGAGTTTTGAAGGTGAGTCCTCTTCTGGTTCTAGTTTGAAACAATCCTATTGTGGTATCTGCATGGAAGCAAAACCGGTTGAAAAAATGTTCGAAAACCCTAACTGTTCACACTCTTTCTGTGTAAACTGTGTTGGGAAATTTCTAGCTGTAAAAGTTCAAGAGAATAGATCAACTGTAAAATGTCCATATCCAAAATGCGATGGTATTTTAGAGCCTCATGATTGTAGCTCAGTTATACCAAAAGATTTGCTTGATAGATGGGAGAATGCAATTTGTGAGGAAACGGTGTTAAGTTCGGAAAAATTCTACTGTCCTTTTAAGGATTGTTCGGCTATGTTGGTGAATGATGAAAAGGAAGCTGTTGTGACGAGTTCGGAGTGTCCGCATTGTCATAGATTGTTCTGTGCACAATGTAAGGTTTCATGGCATGCAGGTGTTGATTGTGAAGAGTTTCAAAGCTTGAAAGATGGGGAGCGAGGGAGGGAGGATATGTTGGCCATGGAGCTTGCTAAGAACAAGAGATGGAAAAGATGTCCGAAATGCGGCTTCTATGTTGAAAGAATTGTGGGATGCACTCGCATTACATGCAGGTGTGGTAATCAATTTTGCTATGGCTGTGGATCTGCTTCGAATAGAGATGATCATTATCATTGTGCAACTCAATAA 891 0.3883 MEGASSSSTTPDHDEEIFQISDEKYAEELQLQEALYFSRTSNTTVTEEEEIQVVEERVETKTLVKSLIQKLKNTMSFEGESSSGSSLKQSYCGICMEAKPVEKMFENPNCSHSFCVNCVGKFLAVKVQENRSTVKCPYPKCDGILEPHDCSSVIPKDLLDRWENAICEETVLSSEKFYCPFKDCSAMLVNDEKEAVVTSSECPHCHRLFCAQCKVSWHAGVDCEEFQSLKDGERGREDMLAMELAKNKRWKRCPKCGFYVERIVGCTRITCRCGNQFCYGCGSASNRDDHYHCATQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4960 296 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 8 294 IPR031127 GO:0004842|GO:0016567
Psa7g4960 296 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 8 294 - -
Psa7g4960 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 175 IPR013083 -
Psa7g4960 296 SUPERFAMILY RING/U-box 89 169 - -
Psa7g4960 296 Gene3D - 177 224 - -
Psa7g4960 296 SUPERFAMILY RING/U-box 234 294 - -
Psa7g4960 296 Gene3D - 225 296 - -
Psa7g4960 296 SMART ibrneu5 233 293 IPR002867 -
Psa7g4960 296 SMART ibrneu5 160 223 IPR002867 -
Psa7g4960 296 ProSiteProfiles Zinc finger RING-type profile. 92 140 IPR001841 -
Psa7g4960 296 SUPERFAMILY RING/U-box 169 227 - -
Psa7g4960 296 Pfam IBR domain, a half RING-finger domain 240 290 IPR002867 -
Psa7g4960 296 Pfam IBR domain, a half RING-finger domain 161 223 IPR002867 -
Psa7g4960 296 ProSiteProfiles TRIAD supradomain profile. 88 296 IPR044066 -
Psa7g4960 296 ProSitePatterns Zinc finger RING-type signature. 110 119 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4960 Psa-Chr7 435174084 435175046 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4960 64 283 C3H Transcription Factor Family AT2G19610 27.391 5.77e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4960 K11975 - gmx:100815626 345.125