Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4959 ATGATGAAAAAGGAAGTTGTTGTGACGAGTTCAGAGTGTCCGCATTGTCATCGATCGTTCTGTGCACATTGTAAGGTTTCATGGCATGCAGGTGTTGATTCTGAAGAGTTTCAAAGCTTGAAAGATGGGGAGAGAGGGAGGGAGGATATGTTGGCCATGGAGCTTGCTAAGAACAAGAGATGGAAAAGATGTCCGAAATGCGGCTTCTATGTTGAAAGAATTGTGGGATGCACTCGCATTACATGCAGGTGTGGTAATCAATTTTGTTATGGTTGTGGTCTACTTGGAATAGAGATGATCATTATCATTGTGCAACTCAATAAACATTTCATGGAGGGAGAGCTTAAGAGATCTTGTTCACTGGATCGATTAATCTGGTTCAGAGGCATCGTCGACAGTACGTCGGAGCAGTTATCGTCGAAAGATCATGAAGAAGTGGAAGACGTGGAAAAGCATTTACCACTCAATGTTGGTTACAAGCAAATATCATTTTGGAAGACACGTTCATGGGCATGCAGGTGTTGTTCTGAAGAGTTTCAAAGCCTTGAAAGATGGGAGAGAGGAGGAGGAGATGGTTGGCCATGGAGCTTGCTAAGAACAAGAGATGGAAAAGATGTCCGAAATGCGGCTTCTATGTTGAAAGAATTGTGGGATGCACTCGCATTACATGCAGGTGTGGTAATCAATTTTGTTATGGTTGTGGTCTACTTGGAATAG 717 0.4296 MMKKEVVVTSSECPHCHRSFCAHCKVSWHAGVDSEEFQSLKDGERGREDMLAMELAKNKRWKRCPKCGFYVERIVGCTRITCRCGNQFCYGCGLLGIEMIIIIVQLNKHFMEGELKRSCSLDRLIWFRGIVDSTSEQLSSKDHEEVEDVEKHLPLNVGYKQISFWKTRSWACRCCSEEFQSLERWERGGGDGWPWSLLRTRDGKDVRNAASMLKELWDALALHAGVVINFVMVVVYLE* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4959 238 Pfam IBR domain, a half RING-finger domain 51 93 IPR002867 -
Psa7g4959 238 ProSiteProfiles TRIAD supradomain profile. 1 123 IPR044066 -
Psa7g4959 238 Gene3D - 32 95 - -
Psa7g4959 238 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 8 93 - -
Psa7g4959 238 SUPERFAMILY RING/U-box 45 94 - -
Psa7g4959 238 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 8 93 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4959 Psa-Chr7 435161328 435167911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4959 12 93 C3H Transcription Factor Family AT2G19610 36.905 1.39e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4959 K11975 - gmx:100815626 158.688