Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4955 ATGGAAGGTGAACAAGTAAACGTTATAATTGACCTAGTCAATGAGATTTCTTACATCTCTGACTTCAGGCCTATGGTGAAGAAACAGTATTGTAATTTAGCACGGAGGTTGAAGCTCTTGATCCCTTTGTTCGAGGAGATTCGGGATATGAATGATTCAATCCCTGATCACACTTCAAAAGCTCTGATTTTGTTTAAACAAGCTCTCGAATCAGCTAGGGAACTTCTCAGATTTGGAACTGAAGGAAGCAAGATTTACATGGTCCTTGAGCGAGACCAGATTATGAAAAAATTCTATGACGTGACAGCTCGGTTGGAACAATCGCTGGACGGAATTTCCTACGATAAACTTGACATCTCAGATGAAGTTAAAGAGCAGGTTGAACTAGTTCTTGCTCAATTTCGTAGGGCAAAAGGGAGAGTTGATGAACCAGATATCAAGTTGTATGAAGATATTTCATCCCTATACAACAATAGCAGTGACGCAGCAACAGATTCAGCTGTTCTAAGTCGATTAGCAGACAAATTGCAATTGATGGGAATAGCCGATCTTACACAAGAATCACTCGCTTTGCATGAGATGGTGGCAGCAAGTAGTGGGGATCCAGGGGCGCGCATCGAGAAAATGTCAATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACCTAGTCAAGGATGATACTATAATAGCAAAAGGCGTTTCTTCAGGATTTCACGGACTAGGGAAAAATGATACGAGTCATCAGGTCCCTGTTATCCCAAGTGATTTTAAATGTCCGATTTCCTTGGAATTGATGACGGATCCTGTCATTGTTTCAACAGGACAGACTTACGAGCGTTCCTGTATTGAGAAGTGGTTGCAAGACGGGCACATGACATGCCCAAAAACACAGCAGTCTCTCACAAGTACTGTTGTCACACCCAACTACGTCTTACGAAGCCTGATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCTGAGCCAAGTAAATCAGCATCAGCCTGCTCCCCAGCTGAGCGAAGTAAGATTGAAAATCTAATTCAAAAGCTCACATCTGGTGGTCCTGAAGACCAGAGATCAGCTGCCGGCGAGATCCGCCTTCTTGCGAAACGCAATGCAGATAATCGTGTAGCTATTGCTGAAGCTGGTGCAATACCTCTTCTCGTTGGTCTCCTCTCTGTGCCCGACTCCCGAACTCAAGAGCATGCTGTAACAGCGCTTCTGAATCTCTCCATATATGAGAGTAACAAAGGAAGCATCGTCTCTTCAGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAGAGGGGAAGCATGGAAGCTCGGGAAAATGCGGCTGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATTGGTTCTTCCGGAGCCATATCACCACTGGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCCACAGCACTCTTCAATTTGTGCATTTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTTATTCCCACGCTGATGCGACTTCTGACAGAACCTAGCGGGGGAATGGTGGATGAAGCATTGGCCATTTTGGCCATTTTGTCTAGTCATCCTGAAGGGAAGTCTGCCATTGGTGCTGCAGAGGCAGTGCCGGTGTTGGTAGAGTTTATTGGGAATGGATCCCCAAGGAACAAAGAGAACGCAGCTGCGGTGTTAGTTCACCTTTGTTCTGGCGATCGACAATATATAGCGCAGGCAGAGGAGCTGGGGGTGATGGCTCCCCTGTTGGAATTGGCTCAAAATGGTACTGACAGAGGTAAAAGAAAGGCAGCACAATTGATAGAGCGAATGAACAGGATCCGGGAGCAAGAACAGCATGAAGTTCAGATACAAGCTGAACTTCTACCTCAGAATGATGATATCCAACCACCACCTTTGATCATTAACCTCGACATTGACACCTGA 1992 0.4523 MEGEQVNVIIDLVNEISYISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMNDSIPDHTSKALILFKQALESARELLRFGTEGSKIYMVLERDQIMKKFYDVTARLEQSLDGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDIKLYEDISSLYNNSSDAATDSAVLSRLADKLQLMGIADLTQESLALHEMVAASSGDPGARIEKMSMLLKKIKDHVQIENLVKDDTIIAKGVSSGFHGLGKNDTSHQVPVIPSDFKCPISLELMTDPVIVSTGQTYERSCIEKWLQDGHMTCPKTQQSLTSTVVTPNYVLRSLIEQWCEANGIEPPKRPSTSEPSKSASACSPAERSKIENLIQKLTSGGPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGSIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILSSHPEGKSAIGAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDRQYIAQAEELGVMAPLLELAQNGTDRGKRKAAQLIERMNRIREQEQHEVQIQAELLPQNDDIQPPPLIINLDIDT* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4955 663 Coils Coil 616 636 - -
Psa7g4955 663 Gene3D - 492 646 IPR011989 -
Psa7g4955 663 Gene3D - 337 491 IPR011989 -
Psa7g4955 663 SMART arm_5 505 545 IPR000225 GO:0005515
Psa7g4955 663 SMART arm_5 423 463 IPR000225 GO:0005515
Psa7g4955 663 SMART arm_5 546 586 IPR000225 GO:0005515
Psa7g4955 663 SMART arm_5 382 422 IPR000225 GO:0005515
Psa7g4955 663 SMART arm_5 588 628 IPR000225 GO:0005515
Psa7g4955 663 SMART arm_5 464 504 IPR000225 GO:0005515
Psa7g4955 663 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 643 - -
Psa7g4955 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Psa7g4955 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Psa7g4955 663 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Psa7g4955 663 CDD RING-Ubox_PUB 259 301 IPR045210 -
Psa7g4955 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Psa7g4955 663 SUPERFAMILY RING/U-box 245 331 - -
Psa7g4955 663 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Psa7g4955 663 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Psa7g4955 663 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Psa7g4955 663 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Psa7g4955 663 SUPERFAMILY ARM repeat 353 640 IPR016024 -
Psa7g4955 663 Gene3D - 3 114 IPR036537 GO:0007166
Psa7g4955 663 MobiDBLite consensus disorder prediction 328 349 - -
Psa7g4955 663 PANTHER U BOX DOMAIN-CONTAINING 5 643 - -
Psa7g4955 663 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Psa7g4955 663 MobiDBLite consensus disorder prediction 332 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4955 Psa-Chr7 434926946 434932223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4955 1 642 U-box Gene Family AT3G46510 68.372 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4955 - - gmx:100812160 1072.77