Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4949 ATGGACTCCGAGGATGATATGCACGATGCCAACGACATGGAGTCCCTCGACGATGACGATTTCTACAGTGGTGACACCGATGATGCCGCTTTGGACTATTACAGCGACTACGATGATGACGCCGGTGATTACTTCGACGATGCCGATAAGATTGATTCTCGTCGCCCTGAGCAAAATTTTACCATCTTGAAGGATTCCGATATCCACGCGAGGCAGGAAGATGACATCAGTAGAGTTGCAGCTGTTCTTTCTTTATCAAGAGTTTTTGCAAGCATACTACTTCGTCACTATAATTGGAGTGTTAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCAAGTCCGAAAAGCGGTTGGCTTGTTGGAAAAGCCAGTTGTCCAGAATCGTAATGCTAGAGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTTGTTCTGGGATTGGAATGGCTTCTTGTGGTCATCCATACTGTTACTCATGCTGGGAAGGATATATCAGCACGTCCATTAATGATGGCCCTGGATGTTTGATGTTGAGATGTCCCGAACCCACCTGTGGGGCTGCTATTGGTCAAGATATGATTGATTTATTAGCATGTGACGAAGATAAACAAAAGTATACCCGTTACCTTCTTAGATCTTATATTGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGCTGTGAATATGCAGTTACTTATGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTACAGCTTTTGCTGGAATTGCACCGAGGAGGCTCATCGTCCCGTAGACTGTGGCACTGTGGTAAAGTGGATTCTGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCAAAGTGCAAGCGGCCAATTGAAAAAAATCAAGGGTGCATGCACATCACGTGCACTCCACCCTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGATCATGGTGAAAGGACCGGTGGATTTTATGCTTGCAATCGTTATGAAGCAGCAAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCGAAAAATTCATTGGAGAGATATACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCCGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTCAGTGACACACAGTGCCAACCTGAGTCACAGCTGAAGTTCATTACTGAGGCCTGGTTGCAGATAGTTGAGTGTAGGAGAGTTCTGAAATGGACGTATGCTTATGGATACTATTTACCTGAGCATGAGCGTGCAAAAAAACCGTTCTTTGAGTACTTGCAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAATGTGCTGAAAAAGAACTACAGCAGTTCCTCAGTGCCGAAGGCCCATCTAAAGAATTTAATGACTTCCGTACAAAGTTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCATTAGAGAATGGTTTAGCTGATGTAGACGGCAATGGAGCTACCTTCAGCAGAGCAACAAGCTCAAAAAATGCAGCAGGGAGCAGCAAGGGGAGAGCTGGCAGAGGAAAGGCAGCTTTGCGAACCAGCAGAACGTCTGATGATAGTCACTGGAGCTGCGACCATTGTTCCTCTATGAATATCAAATCTGCTACCACATGCCAGATTTGCAATCAACGTCGATGA 1755 0.4439 MDSEDDMHDANDMESLDDDDFYSGDTDDAALDYYSDYDDDAGDYFDDADKIDSRRPEQNFTILKDSDIHARQEDDISRVAAVLSLSRVFASILLRHYNWSVSKVHDAWFADEEQVRKAVGLLEKPVVQNRNARELTCGICFENYPCSGIGMASCGHPYCYSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDLLACDEDKQKYTRYLLRSYIEDNKKSKWCPAPGCEYAVTYDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKPFFEYLQGEAESGLERLHQCAEKELQQFLSAEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDGNGATFSRATSSKNAAGSSKGRAGRGKAALRTSRTSDDSHWSCDHCSSMNIKSATTCQICNQRR* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4949 584 CDD RING-HC_RBR_TRIAD1_like 137 187 - -
Psa7g4949 584 SMART ibrneu5 206 268 IPR002867 -
Psa7g4949 584 SMART ibrneu5 281 342 IPR002867 -
Psa7g4949 584 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 535 IPR031127 GO:0004842|GO:0016567
Psa7g4949 584 SUPERFAMILY RING/U-box 207 275 - -
Psa7g4949 584 MobiDBLite consensus disorder prediction 528 553 - -
Psa7g4949 584 ProSitePatterns Zinc finger RanBP2-type signature. 561 580 IPR001876 -
Psa7g4949 584 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Psa7g4949 584 Pfam Ariadne domain 355 516 IPR045840 -
Psa7g4949 584 MobiDBLite consensus disorder prediction 1 23 - -
Psa7g4949 584 Gene3D - 264 519 - -
Psa7g4949 584 SUPERFAMILY RING/U-box 287 335 - -
Psa7g4949 584 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 -
Psa7g4949 584 Pfam IBR domain, a half RING-finger domain 206 268 IPR002867 -
Psa7g4949 584 ProSiteProfiles Zinc finger RanBP2 type profile. 557 584 IPR001876 -
Psa7g4949 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 218 IPR013083 -
Psa7g4949 584 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Psa7g4949 584 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 535 - -
Psa7g4949 584 SUPERFAMILY RING/U-box 133 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4949 Psa-Chr7 434753137 434760706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4949 18 584 ARIADNE family AT1G65430 69.983 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4949 K11968 - gmx:100810427 1032.71