Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4946 ATGGAGGCCAAAATCCTCTACATTGCCTTCATCATCTTCACAATGTCGATTGTTGAAGCCAGAATTCCAGGAATTTACTCTGGAGGTCAATGGCAAACTGCTCACGCTACTTTCTACGGCGGATCTGATGCTTCCGGCACCATGGGTGGAGCGTGTGGTTATGGAAATTTGTACAGTCAAGGCTACGGAGTGAACACGGCGGCATTGAGCACTGCTTTGTTCAACAGTGGTCTGAGCTGCGGTGCATGTTTTGAGATAAAGTGTGCTAACGACAGAGAATGGTGTCATTCTGGAAGCCCTTCCATTTTAATTACTGCAACTAACTTTTGTCCTCCGAATTTTGCTCTTCCTAATGATAATGGCGGTTGGTGTAACCCTCCTCGTCCTCATTTTGATCTCGCCATGCCTATGTTTCTTAAGATTGCTGAGTATCGTGCCGGTATCGTCCCCGTAGCGTATCGCAGGGTGCCATGTAGAAAGCGCGGGGGAATAAGATTCACGGTGAATGGATTCCGTTACTTTAACCTGGTGCTAATTAGCAACGTGGCGGGCGCTGGAGATATCGTGCGCGCGTACGTGAAAGGAACCCGAACCGGGTGGATGCCACTGAGCCGAAACTGGGGTCAGAACTGGCAATCGAACGCGGTTTTGGTGGGCCAGGCTTTGTCTTTCCGTGTCTCGAGCAGTGACCGTAGATCTTCCACTTCTTGGAACATTGCTCCTCCTAATTGGCAATTTGGTCAAACTTTCGCCGGAAAGAATTTTAGAGTCTAG 774 0.491 MEAKILYIAFIIFTMSIVEARIPGIYSGGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDREWCHSGSPSILITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTVNGFRYFNLVLISNVAGAGDIVRAYVKGTRTGWMPLSRNWGQNWQSNAVLVGQALSFRVSSSDRRSSTSWNIAPPNWQFGQTFAGKNFRV* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4946 257 SMART dpbb_1 66 153 IPR007112 -
Psa7g4946 257 Gene3D - 19 159 IPR036908 -
Psa7g4946 257 PANTHER EXPANSIN-A15 4 256 IPR002963 GO:0009664
Psa7g4946 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Psa7g4946 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Psa7g4946 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Psa7g4946 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Psa7g4946 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Psa7g4946 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Psa7g4946 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Psa7g4946 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Psa7g4946 257 PANTHER EXPANSIN 4 256 - -
Psa7g4946 257 Gene3D - 163 255 IPR036749 -
Psa7g4946 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Psa7g4946 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Psa7g4946 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Psa7g4946 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Psa7g4946 257 SUPERFAMILY PHL pollen allergen 160 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4946 Psa-Chr7 433914754 433917637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4946 1 257 Expansin Gene Family AT2G39700 83.658 1.50e-165 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4946 - - gmx:100809139 494.967