Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4939 CAGGAGGTAATATCCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATCGAGGAAAGAGAACAAGGTATTCAAGAAGTCCAGCAGCAGATTGGGGAAGTAAATGAGATCTTCAAAGATCTTGCCGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGATCCAACATTGAGCATTCCCATGAAGCCACTGCCCAAGCAAAATCAGAACTTGTGAAAGCTTCTAAGACACAACGATCAACTGCAAATGCTGGTTTTGATGGTTCTTTAATTTACAGCAAATTGTTGGAACAAGATAATCTTAATTTGGGTTTCGATGCTGCTAAAGGAACTTATGTTGATATGGTGAAGGCTGGGATTATAGATCCTGTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTATCGTTGTTACTGACGACAACCGAGGCATCTATTGTAGAAAATATGAGTGATAAAAACAAACCTCCTCAAAGGGTGGCAGATATGGATGATTTGGACTACTAA 519 0.395 QEVISLDNEISFNEAIIEEREQGIQEVQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATAQAKSELVKASKTQRSTANAGFDGSLIYSKLLEQDNLNLGFDAAKGTYVDMVKAGIIDPVKVVRTALVDAASVSLLLTTTEASIVENMSDKNKPPQRVADMDDLDY* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4939 172 SMART tSNARE_6 9 76 IPR000727 -
Psa7g4939 172 MobiDBLite consensus disorder prediction 153 172 - -
Psa7g4939 172 Pfam TCP-1/cpn60 chaperonin family 84 148 IPR002423 GO:0005524
Psa7g4939 172 PANTHER SYNTAXIN 2 94 IPR045242 -
Psa7g4939 172 SUPERFAMILY GroEL equatorial domain-like 84 152 IPR027413 -
Psa7g4939 172 SUPERFAMILY SNARE fusion complex 9 81 - -
Psa7g4939 172 Gene3D - 15 77 - -
Psa7g4939 172 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 14 76 IPR000727 -
Psa7g4939 172 CDD SNARE_Qa 17 75 - -
Psa7g4939 172 Pfam SNARE domain 51 83 IPR000727 -
Psa7g4939 172 Gene3D - 78 160 IPR027413 -
Psa7g4939 172 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 94 - -
Psa7g4939 172 ProSitePatterns Syntaxin / epimorphin family signature. 20 59 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4939 Psa-Chr7 432046347 432047372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4939 1 85 SNARE and Associated Proteins AT5G46860 70.588 3.87e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4939 K04077 K08488 gmx:100778935 144.436