Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4901 ATGGGGAGTTGCGTATCAACACAAGGCAAAAATGGCATCCGAAAGAGATCAAAAGATCACCACAACAACAACAACAACAACAAACACGTCAAAACCGCATTCGATCAAGACCACGAAGCTCCAACGCCGACGGCGCGTAGATCAAGCGTGACATCGCGTCCACTAAACGTCGTGACAAATCCAAGTGCGGGTAGCATATTCGATAAATACGAGCTGGGAAAAGAGCTTGGGAGAGGCGAATTCGGCGTGACAGTGCGTTGCGTGGACCTGCAGACGGGTGAGGCATTTGCGTGTCATTATACAGAAAGAGCTGCTGCGAATGTAGCGAAAACCATTCTTGAAGTTTGCAAGGTGTGTCATGAGCATGGTGTGATACATAGGGACTTAAAGCCTGAAAATTTCTTATTTTCAGATGCAAGTGAGACAGCCTCACTTAAGGCAATTGATTTTGGACTTTCCACTTTTTATGTAACTGGCGATAGATTCAATGAAATTGTTGGAAGTCCTTATTACATGGCTCCGGAAGTTTTGAGACGAAACTATGGACAAGAGATCGATATATGGAGCACCGGCGTTATTCTTTATATTTTGCTTTGTGGTGTTCCACCCTTTTGGGCAGAAACTGAAGAAGCCATAGCGCAGGCGATAATCCGGGGTAATGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGAAGAAGCAAAATCCCTTGTTAAGCGTATGCTTGATCCAAATCCATACACTAGAATCACAGTTCAAGAAGCTCTTGATCATTCTTGGATACAACATAGGGAGCATGGTAGAAATGTTTCTCTTGGAGACCATGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAATAGATTCAAGAAGAAAGTCCTTAGAGTGGTGGCTGATAATTTGCCGGATGATCAAATTGATGGACTTAGAAAACTGTTTGATATGATGGATAAGGACAATGATGGACTCTTAACATTTGAAGAGCTGAAAGATGGCTTTTCAATGATTGGACAAGTTATTCCTGATCCTGATATTCAGACCTTAATCGACGCTGCAGATTCGGATGGAAACGGCAACTTGAATTGCGAAGAGTTCATCACAATGAGTGTTCATTTGAGAAAGATAGGAAATGATGAGCATCTCTCAGAAGCATTTGATTTCTTTGACAAGAATAAGAGCGGATACGTTGAGTTTGACGAGTTAAAGGATGCCTTATCAGATGATGATTCGACCGACGACCAGGTGGTTAGAGACATTCTAAACGATGTTGATTTGGATAAGGATGGTCGAATAAGTTTTGAGGAGTTTAAGGCAATGATGACGACAGGAGGAGATTGGAAAATGGCTTCTCGACAGTATTCAAGAGCAATGCTAAATGCATTAAGCTTCAGAATGTTTAAAGACAAATCTGCTGGAGTAGTAATTAACTGA 1434 0.4184 MGSCVSTQGKNGIRKRSKDHHNNNNNNKHVKTAFDQDHEAPTPTARRSSVTSRPLNVVTNPSAGSIFDKYELGKELGRGEFGVTVRCVDLQTGEAFACHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFSDASETASLKAIDFGLSTFYVTGDRFNEIVGSPYYMAPEVLRRNYGQEIDIWSTGVILYILLCGVPPFWAETEEAIAQAIIRGNVDFTRDPWPKVSEEAKSLVKRMLDPNPYTRITVQEALDHSWIQHREHGRNVSLGDHVRMRIKQFSLMNRFKKKVLRVVADNLPDDQIDGLRKLFDMMDKDNDGLLTFEELKDGFSMIGQVIPDPDIQTLIDAADSDGNGNLNCEEFITMSVHLRKIGNDEHLSEAFDFFDKNKSGYVEFDELKDALSDDDSTDDQVVRDILNDVDLDKDGRISFEEFKAMMTTGGDWKMASRQYSRAMLNALSFRMFKDKSAGVVIN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4901 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa7g4901 477 ProSiteProfiles EF-hand calcium-binding domain profile. 341 376 IPR002048 GO:0005509
Psa7g4901 477 ProSiteProfiles EF-hand calcium-binding domain profile. 305 340 IPR002048 GO:0005509
Psa7g4901 477 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 99 458 - -
Psa7g4901 477 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 47 98 - -
Psa7g4901 477 SUPERFAMILY EF-hand 301 441 IPR011992 -
Psa7g4901 477 CDD EFh 310 369 IPR002048 GO:0005509
Psa7g4901 477 Gene3D - 269 443 - -
Psa7g4901 477 Pfam Protein kinase domain 99 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g4901 477 ProSitePatterns EF-hand calcium-binding domain. 354 366 IPR018247 -
Psa7g4901 477 CDD EFh 381 442 IPR002048 GO:0005509
Psa7g4901 477 MobiDBLite consensus disorder prediction 18 42 - -
Psa7g4901 477 ProSiteProfiles Protein kinase domain profile. 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g4901 477 PANTHER SERINE/THREONINE-PROTEIN KINASE 99 458 - -
Psa7g4901 477 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 98 - -
Psa7g4901 477 ProSiteProfiles EF-hand calcium-binding domain profile. 377 411 IPR002048 GO:0005509
Psa7g4901 477 SMART efh_1 309 337 IPR002048 GO:0005509
Psa7g4901 477 SMART efh_1 381 409 IPR002048 GO:0005509
Psa7g4901 477 SMART efh_1 345 373 IPR002048 GO:0005509
Psa7g4901 477 SMART efh_1 416 444 IPR002048 GO:0005509
Psa7g4901 477 SUPERFAMILY Protein kinase-like (PK-like) 51 267 IPR011009 -
Psa7g4901 477 Pfam EF-hand domain pair 380 441 IPR002048 GO:0005509
Psa7g4901 477 Pfam EF-hand domain pair 310 369 IPR002048 GO:0005509
Psa7g4901 477 SMART serkin_6 70 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa7g4901 477 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Psa7g4901 477 Gene3D Transferase(Phosphotransferase) domain 1 91 268 - -
Psa7g4901 477 ProSitePatterns EF-hand calcium-binding domain. 318 330 IPR018247 -
Psa7g4901 477 MobiDBLite consensus disorder prediction 1 53 - -
Psa7g4901 477 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4901 Psa-Chr7 429245870 429248551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4901 1 98 EF-hand Containing Proteins AT2G31500 41.346 6.91e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa7g4901 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4901 K13412 - gmx:100818929 627.091