Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4889 ATGGAGTCAGATCTTCAGCAGCATCCAACTATGTTTCTTGATCATCAAAATCATCATCACCAGCCTCAAATGAATTCCGGGTTAACTCGGTTTAAATCTGCACCAAGTTCATATTTTTCTAATATTATTGATAAAGAGTTCTATGAGCATCTTTTTAACCGACCTTCAAGTCCTGAAACGGAACGAGTTTTTGCTCGGTTTATGAATAGTCTTAGTGGTAGTGGTAGTGGTGGTGGCGGTGGTGATGCTGAAAGTGCTTCTGTTGCGGTTGCTGTAGCTGCTGGAGATGATGATTCGCTGACTCAGGATCTATTAACTGTTCAACAACAGCTTCCTATAGTTAAGGAAGAGATTGAGCAACAATCTCAAACTTTGACATCAATGAATAATGAAACTTTGGATCTTCAACAGCTTCAACGACAACCAAGTAATATGAATAATTATGGATCCTCTGGTCCTCAGAAATCTTACCAAAGTTCTGGAAGACCACCTTTGCCAAATCAAATGAAGACTGGTAGAGGAAGCTGTTCCAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAACTGGTTTTGCTGTTATGAGAGGTATTGGAACGATTGGAGCTGCTAACAGCACTAGCATAGAAGCAAATTTCTCTTCTTCTGCAGCGCGGTTAAAGAATGCGAGTGCTCCGAACTACTCAGCAGTGTTAGGAGGTGAAATCGGGAATTGTAGCAATCCACAAAATAATCTAGAATCGGAAGGTTTTGCTGAAACCCGGGGCAATGATTTTATCCCGGGTTTCCCTTTAGTTTCTACATGGGAGGATACTGCAATGATATCGGACAATATTACCGGTCTAAAAAGATACAGAGATGATGACGATGTAAAACCGTTTTCTACCGGTTTAAATGCGGCTGAAAATAAGAATGAAACAGGAGGCCAGACTCCCGCCACTCCTTTGGCTCATCAGACGAGTATGCCTAATACCACGGCGGAATTGGCAGCCATTGAGAAGTTTTTACAGTTGTCAGATTCTGTTCCATGCAAAATCCGCGCCAAGCGCGGCTGCGCCACTCACCCGAGAAGCATTGCAGAAAGGGTCAGAAGAACTAAAATTAGCGAGCGAATGAGGAAACTACAAGATCTGGTGCCAAACATGGATAAGCAAACAAACACATCAGATATGTTGGACTTAGCTGTTGAGTACATTAAAGACCTACAAAAACAAGTTGAGACTCTTTCACAAAATCGAGCTAAGTGCACGTGTTCACATCACCAATGA 1290 0.4178 MESDLQQHPTMFLDHQNHHHQPQMNSGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGGGGGDAESASVAVAVAAGDDDSLTQDLLTVQQQLPIVKEEIEQQSQTLTSMNNETLDLQQLQRQPSNMNNYGSSGPQKSYQSSGRPPLPNQMKTGRGSCSNLIRHGSSPAGLFSNINIETGFAVMRGIGTIGAANSTSIEANFSSSAARLKNASAPNYSAVLGGEIGNCSNPQNNLESEGFAETRGNDFIPGFPLVSTWEDTAMISDNITGLKRYRDDDDVKPFSTGLNAAENKNETGGQTPATPLAHQTSMPNTTAELAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQKQVETLSQNRAKCTCSHHQ* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4889 429 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 428 - -
Psa7g4889 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 423 IPR036638 GO:0046983
Psa7g4889 429 Pfam Helix-loop-helix DNA-binding domain 364 410 IPR011598 GO:0046983
Psa7g4889 429 Gene3D - 360 428 IPR036638 GO:0046983
Psa7g4889 429 Coils Coil 399 426 - -
Psa7g4889 429 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 18 428 - -
Psa7g4889 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 409 IPR011598 GO:0046983
Psa7g4889 429 SMART finulus 365 415 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4889 Psa-Chr7 427651973 427655215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4889 1 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.908 2.40e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa7g4889 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4889 - - gmx:100803833 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4889 7 427651973 427655215 Psa7g4889 7 427651973 427655215 ECH
Psa5g6620 5 554419836 554422079 Psa7g4889 7 427651973 427655215 ECH
Psa3g1642 3 146998688 147000712 Psa7g4889 7 427651973 427655215 ECH