Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4867 ATGATCTCTACATCAAGAGGAGAAGGAGATAGAATGAGGAAACCAGAAGCTGCATCATCTGGTAAAAACAGCACAAACAATAAGCTTAGAAAAGGGTTGTGGTCACCAGAGGAAGATGAGAAACTTATGAACTACATGTTGAACAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGATTGCAAAGATGTGGAAAAAGTTGTAGGCTAAGATGGATTAACTACTTGAGACCTGATCTTAAACGTGGTGCATTTTCACAACAAGAAGAAGAACTTATCATCCATTTGCATTCTCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCAGGAAGAACAGACAACGAAATCAAGAACTTCTGGAATTCGACGATAAAGAAAAGACTCAAGAACATGTCGTCGAACACTTCGCCAAACCCTAGCGACGAATCCTCGTACGACCCTAGCAAAGATCATAATAACATGGGAGGTTTCATATCATCTTCAACACAAGATCAACATATTGATAATAATCATTTCATGCCTATGTTCAATACTTCATCACCACCATCAATGCAAAACACAGTTTTCAATACCATCATCTCAGCTTCTTCTGGCGGTGGATTCTTCAATAACAACACTACAGGATCATACTTGTCACAGAATAATCATGACAGCAAAAGTACTTTTTATTTGGAAAAAGTGTTTGGGAGTGTAAATATTAATGGTGATGATGAAATGGGAATTTACAATGTTCCTCCTCTAGAGAGTGTTAACAGTACTATCAGTTATGATGAGCATAGTATAAAAATGGAGAAGAACATTGCATTCAAAGGAGAAGATACATATAACAATAGTAGCTATAACTTTGATGACATTAACAACATGGTTAATGTTAGCAAAAGAAGTGATAATCAAAATAGAGGTGAAGATGAGGTGGAGAATTTGTTTCATGGAGATTTATCTGTGGGAGATTGGGACTTGGAGGATTTGATGAAAGATGTTTCATCTTTTCCATTTCTTGATTTTTCAAACTGA 1029 0.3703 MISTSRGEGDRMRKPEAASSGKNSTNNKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNPSDESSYDPSKDHNNMGGFISSSTQDQHIDNNHFMPMFNTSSPPSMQNTVFNTIISASSGGGFFNNNTTGSYLSQNNHDSKSTFYLEKVFGSVNINGDDEMGIYNVPPLESVNSTISYDEHSIKMEKNIAFKGEDTYNNSSYNFDDINNMVNVSKRSDNQNRGEDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4867 342 CDD SANT 34 78 IPR001005 -
Psa7g4867 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Psa7g4867 342 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Psa7g4867 342 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Psa7g4867 342 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Psa7g4867 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Psa7g4867 342 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Psa7g4867 342 SMART sant 30 80 IPR001005 -
Psa7g4867 342 SMART sant 83 131 IPR001005 -
Psa7g4867 342 MobiDBLite consensus disorder prediction 1 33 - -
Psa7g4867 342 Gene3D - 85 158 - -
Psa7g4867 342 Gene3D - 28 84 - -
Psa7g4867 342 CDD SANT 86 126 IPR001005 -
Psa7g4867 342 PANTHER MYB TRANSCRIPTION FACTOR 12 341 - -
Psa7g4867 342 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
Psa7g4867 342 PANTHER MYB DOMAIN PROTEIN 55 12 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4867 Psa-Chr7 423330892 423334877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4867 2 340 MYB Transcription Factor Family AT3G08500 45.810 4.22e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa7g4867 Myb_DNA-binding 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4867 K09422 - gmx:100786151 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g4867 7 423330892 423334877 Psa7g4867 7 423330892 423334877 ECH