Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4820 ATGAATTCTGATACCCAACCCGAAACGGCGTCGTTCTGGTGTTACAGTTGCACGCGCTTCGTTAACCTTTCAGATCACAGTATCGTCGTTTGTCCACACTGCGAGAGCGGTTTCGTTGAAGAGATCCAAGCCGGCGAGTCGCCGCATCACCGACTCAGTCCTTTCCCCGACGACGCTGTTTCTACACGGAGACAAGGGTTTCGCCGCCGAAGACGCGACGCTGGAAGTCGGTCCCCTTTCAATCCTGTCATCGTTCTTCGCGGAGCCGGTGAAGATGGTACCGATCAAGAAGGCGGTAGCGCGTTTGAACTGTTTTATGATGACGGCGACGGTTCTGGTCTTCGTCCGTTACCGCCGACAGTTTCGGAGTTTCTGCTTGGATCTGGATTTGATCGGTTGTTGGAGCAGTTTTCGCAGATCGAGATGAATGGATTTGGACGGCCGGAGAATCCGCCGGCATCTAAGGCGGCTATTGAGTCTATGCCGACGGTTGAGATCTGTGAGGAACAGGTTAGTTGTGAAATGCACTGTGCAGTTTGCAAAGAGGAGTTTGAGTTGGGCGCGGAGGCGCGTGAACTACCCTGCAAGCATATCTATCATTCCGATTGCATTCTTCCATGGTTGTCGGTGCGGAACTCGTGCCCTGTGTGCCGTCACGAGCTTCCTTCTGATCTTAATAACCCTTTGGAATCTAGGGTTTCTGGACAAATTGATGAAGAAGCTATCGGATTAACAATATGGAGGTTACCCGGTGGTGGATTCGCTGTGGGGAGATTCTCCGGTGGACGGAGTGCAGGGGAAAGTCATTTTCCGGTTGTTTACACGGAGATGGATGGTGGGCTCAATGCAAACGGAGCTCCGAGAAGAATTTCTCGAACTGTGAGGAGTCATAGGGTTAGGGAAAGTCGAGGAATTGGAAGAGCTTTTCGTAATTTCTTCTCATTCTTTGGGAGAATCGGTTCTAGGTCAAATTCTGGTTCTGATAATGTTTCTGTGAGTAGAAGCCGTAGCTTAGTGAATTCAATGTTTAATAGAAATTCACGCAGACGTAGGAGAACTTTGGAGTTGGAAGATTGA 1077 0.4995 MNSDTQPETASFWCYSCTRFVNLSDHSIVVCPHCESGFVEEIQAGESPHHRLSPFPDDAVSTRRQGFRRRRRDAGSRSPFNPVIVLRGAGEDGTDQEGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEEQVSCEMHCAVCKEEFELGAEARELPCKHIYHSDCILPWLSVRNSCPVCRHELPSDLNNPLESRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRISRTVRSHRVRESRGIGRAFRNFFSFFGRIGSRSNSGSDNVSVSRSRSLVNSMFNRNSRRRRRTLELED* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4820 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 224 IPR013083 -
Psa7g4820 358 CDD RING-H2_RNF126_like 177 218 - -
Psa7g4820 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 307 - -
Psa7g4820 358 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Psa7g4820 358 Pfam Ring finger domain 176 218 IPR001841 -
Psa7g4820 358 SMART ring_2 177 217 IPR001841 -
Psa7g4820 358 Pfam Protein of unknown function (DUF1117) 242 348 IPR010543 -
Psa7g4820 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 307 - -
Psa7g4820 358 SUPERFAMILY RING/U-box 157 226 - -
Psa7g4820 358 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4820 Psa-Chr7 418476116 418479398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4820 116 224 C3H Transcription Factor Family AT5G01980 47.706 9.10e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4820 - - gmx:100804867 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6555 5 551969765 551971878 Psa7g4820 7 418476116 418479398 PCT