Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g4803 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACGGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAACAAACTTGCTAGCAAGCATCAAAGGCTTCTCCTTCAATCTCTTTCTAATAAGCTTCCCAAATGTGATATCTGTCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGATAGAGCACTGTTCTGTAAGGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGCAAACCACCAGCGCTTTCTCGCAACAGGTATACGCGTTGCTTTGGGTTCTAGTTGCACTCAAGGGAATGATAAAAGCCAAATTGAACCATCTAATCAAGATACAAAACAAGTTCCTTTTGAAGTTCCTGCACAGCAAGTGCCTAGTTTTGCTTCCTCTTGGGCTGTTGATGACTTGTTGGAATTTACAGACTTTGATTCTTCAGACAAAAAGCAATCCCTTGAATTCGGAGAGCTTGAGTGGCTATCAGACGCAGGTCTTTTCAACGAACAGTTTCCTCATGAAGGTTTAGCTGCGGCTGAAGTTCCTCAACTTTCAGTAACACATGCTAGCAATGTTGCATCATACAAAGCTCCTAAGTCGTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCACCATGAAGACGATGACGATGAGCATTTCACCGTGCCTGATCTCGGATAA 720 0.4167 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQSLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALGSSCTQGNDKSQIEPSNQDTKQVPFEVPAQQVPSFASSWAVDDLLEFTDFDSSDKKQSLEFGELEWLSDAGLFNEQFPHEGLAAAEVPQLSVTHASNVASYKAPKSYMSYKKPRIEVHHEDDDDEHFTVPDLG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g4803 239 Gene3D Classic Zinc Finger 1 93 - -
Psa7g4803 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Psa7g4803 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Psa7g4803 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Psa7g4803 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Psa7g4803 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Psa7g4803 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Psa7g4803 239 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Psa7g4803 239 CDD Bbox1_BBX-like 5 47 - -
Psa7g4803 239 CDD Bbox1_BBX-like 56 98 - -
Psa7g4803 239 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g4803 Psa-Chr7 416598234 416601139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g4803 1 161 Orphan Transcription Factor Family AT1G06040 67.262 6.38e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Psa7g4803 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g4803 - - gmx:100779183 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6650 5 555813839 555815702 Psa7g4803 7 416598234 416601139 PCT